Detailed information of component protein


Summary

Component ID T6CP011044
Component protein type TssO
T6SS ID (Type) T6SS00907 experimental (Type iii)
Strain Bacteroides fragilis NCTC 9343
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF9343_RS09375
Coordinate (Strand) 2348402..2348905 (-)
NCBI ID 492242849
RefSeq NC_003228
Uniprot ID A0A015XI10_BACFG, A0A016CPR5_BACFG, A0A015V650_BACFG, A0A015X3T8_BACFG, A0A017NDR3_BACFG, A0A016EEE2_BACFG, Q5LDV2_BACFN, A0A081TTN3_BACFG, E1WVT1_BACF6, A0A0E2ANW2_BACFG
KEGG ID bfb:VU15_08280, bfg:BF638R_1974, bfs:BF9343_1922
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssO PF17561.4 2.9e-07 5..149
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MKAKNSEKIIRG
Transmembrane helix 13-35 YLEFAGGLLISTALSMALLTGFI
Outside 36-167 HTNGSEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSNDRLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTLGNISVEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8539 - -


  Protein sequence: 168 a.a.    

>T6CP011044 NC_003228:c2348905-2348402 [Bacteroides fragilis NCTC 9343] [TssO]
MKAKNSEKIIRGYLEFAGGLLISTALSMALLTGFIHTNGSEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSND
RLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTL
GNISVEK*

  Nucleotide sequence: 504 bp    

>T6CP011044 NC_003228:c2348905-2348402 [Bacteroides fragilis NCTC 9343] [TssO]
ATGAAAGCAAAGAACAGTGAGAAAATCATCCGTGGATATTTGGAGTTTGCCGGCGGACTGTTAATCAGTACGGCTTTGAG
CATGGCACTGCTCACAGGCTTTATCCATACGAATGGAAGCGAATATAAGCTAATGGAATCCAAAACACAAGAATACGATA
AGATTTACGCCAGACAGATTGCCCTGGTGGATAAGGTGGATTCGCTGTATAACTACTTGGTGCTGATGGGCAGTAACGAC
CGGCTGAATCAGGTGGTGCTCCAAAAAGTTATCAGTACACGCAAGATGGAACTTATCGAGGAACTGCAAATAATGGATAG
CAAGGATGTACTTCTGTACAAAAAACTGGCTTCGCAAATCAACGTGTTTCTGGACACCAAAGAAGCCATACGTAAAGCGG
TTATTGAAGAAAGCCTTGTGAGAAAAGACCTGATGCGGTGCATTCAGGACAATAAACAGGCTACCCGAAAGCTGACATTG
GGAAACATTAGTGTAGAAAAGTAA