Detailed information of component protein


Summary

Component ID T6CP011037
Component protein type TssE
T6SS ID (Type) T6SS00905 experimental (Type i1)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (142 a.a.); Nucleotide sequence (426 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 17183..17608 (-)
NCBI ID 611963715
GenBank KF678350
Uniprot ID Q6TKU9_ECOLX
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.3e-14 32..119

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-141 MLRRDSGPTGSLFERIREAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCYGSPELGITDLNDESLASSDFRREIRKSISQCILHYEPRITDVVVTAAAPDEYAPVELCFHIVATVDVSETRGVFEFDILLDNHQRYCVE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9392 - -



  Protein sequence: 142 a.a.    

>T6CP011037 KF678350:c17608-17183 [Escherichia coli] [TssE]
MLRRDSGPTGSLFERIREAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCYGSPELGITDLNDESLASSDFRREIRKSI
SQCILHYEPRITDVVVTAAAPDEYAPVELCFHIVATVDVSETRGVFEFDILLDNHQRYCVE*

  Nucleotide sequence: 426 bp    

>T6CP011037 KF678350:c17608-17183 [Escherichia coli] [TssE]
ATGCTAAGACGGGATTCAGGACCAACCGGCAGTCTTTTTGAACGTATCCGTGAGGCGGCAAATCCGCCTTCATATCAGAA
TCCAAAAGAAGCACTGATACGTTCCATCAGACGTAACCTGCGACAGGTCCTGAATACCCGCTCCGGCAGTTGTTATGGTT
CACCGGAGCTGGGGATTACTGATTTAAATGATGAATCGCTGGCCTCCAGCGATTTCAGACGAGAAATCCGTAAGTCCATT
AGCCAGTGCATTTTACATTACGAACCTCGTATTACCGATGTTGTTGTTACGGCTGCTGCACCGGATGAATACGCCCCTGT
GGAACTGTGTTTTCATATTGTGGCTACGGTCGATGTCAGCGAAACCAGGGGAGTGTTTGAATTTGACATTTTGCTGGACA
ACCATCAACGCTATTGTGTGGAGTGA