Detailed information of component protein


Summary

Component ID T6CP011035
Component protein type TssG
T6SS ID (Type) T6SS00905 experimental (Type i1)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (350 a.a.); Nucleotide sequence (1050 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 14323..15372 (-)
NCBI ID 611963713
GenBank KF678350
Uniprot ID Q6TKU6_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-85 23..335
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-349 MAGENGPARPDIATKPPLPADVRNCNFYVLMEALYRRHGAPGQDISLRTEPAREIVRFSSDASISFPGTDLSALSRSQNGQYVLQTRFLGFSGSQSPLPGYYLDQMAQESAQNEDGLKEFLDLFSHRWTQFAYHAWRKYRYYICFRSGGTDTFSQRMYALVGLGNQSVRDRLAINHSKMLAYAGILATPGRAPEVICNLVSHCFDLPDVTIERWQLRKVAIDPAHQNRLGVRNPKGKTAGHIPGRSILGVNFTLGARVPDRSGKFLLQIGGLSRERYLSFLPDGENHLPLTMFLSFILRDQFAWDLRLCLAPQQAKGMRLSDPASSRLGRTSFIGQPKVPPAITIRIRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9872 - -


  Protein sequence: 350 a.a.    

>T6CP011035 KF678350:c15372-14323 [Escherichia coli] [TssG]
MAGENGPARPDIATKPPLPADVRNCNFYVLMEALYRRHGAPGQDISLRTEPAREIVRFSSDASISFPGTDLSALSRSQNG
QYVLQTRFLGFSGSQSPLPGYYLDQMAQESAQNEDGLKEFLDLFSHRWTQFAYHAWRKYRYYICFRSGGTDTFSQRMYAL
VGLGNQSVRDRLAINHSKMLAYAGILATPGRAPEVICNLVSHCFDLPDVTIERWQLRKVAIDPAHQNRLGVRNPKGKTAG
HIPGRSILGVNFTLGARVPDRSGKFLLQIGGLSRERYLSFLPDGENHLPLTMFLSFILRDQFAWDLRLCLAPQQAKGMRL
SDPASSRLGRTSFIGQPKVPPAITIRIRE*

  Nucleotide sequence: 1050 bp    

>T6CP011035 KF678350:c15372-14323 [Escherichia coli] [TssG]
ATGGCAGGAGAAAATGGGCCAGCACGCCCTGATATAGCGACAAAACCGCCGTTACCGGCGGATGTGCGCAACTGCAATTT
CTATGTGCTGATGGAGGCGCTGTACCGTCGGCATGGCGCGCCGGGCCAGGACATTTCCCTGCGTACCGAGCCTGCCCGGG
AGATCGTGCGTTTCAGCTCTGACGCCAGTATCAGTTTTCCGGGTACGGACCTGAGTGCGCTTTCCCGTAGCCAGAACGGA
CAGTATGTACTGCAAACCCGGTTCCTGGGTTTTTCCGGCAGCCAGTCGCCGCTACCGGGCTATTATCTGGATCAGATGGC
GCAGGAGTCCGCACAGAACGAAGACGGCCTGAAAGAATTTCTCGATCTATTCAGCCACCGCTGGACACAGTTTGCCTATC
ATGCCTGGCGCAAATACCGCTACTACATCTGCTTTCGTAGCGGCGGTACTGACACCTTTTCACAGCGCATGTACGCACTG
GTCGGGCTGGGTAATCAGAGCGTGCGTGACAGGCTTGCCATTAACCACAGCAAAATGCTGGCCTACGCCGGAATTCTGGC
AACACCAGGCCGCGCGCCGGAGGTTATCTGTAATCTGGTGTCGCACTGTTTTGATTTGCCGGATGTCACCATTGAACGCT
GGCAACTGCGTAAAGTCGCCATTGATCCGGCACACCAGAACCGGCTGGGTGTACGTAATCCGAAAGGAAAAACGGCTGGA
CATATTCCGGGACGCTCCATACTCGGCGTTAATTTTACCCTCGGCGCACGGGTGCCGGATCGCAGCGGAAAATTCCTGTT
GCAGATTGGCGGCCTGTCGCGGGAGCGTTATCTCTCATTTTTACCCGATGGCGAAAATCACCTGCCGCTGACCATGTTCC
TTTCCTTTATTCTGCGCGACCAGTTTGCCTGGGATTTACGGCTGTGCCTGGCGCCACAGCAGGCTAAAGGGATGCGCCTT
AGCGATCCGGCCAGCTCCCGCCTCGGCAGAACCAGCTTTATTGGTCAGCCGAAAGTACCGCCCGCCATCACAATCCGAAT
CAGGGAATAA