Detailed information of component protein


Summary

Component ID T6CP011029
Component protein type TssM
T6SS ID (Type) T6SS00905 experimental (Type i1)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (1156 a.a.); Nucleotide sequence (3468 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1867..5334 (-)
NCBI ID 611963705
GenBank KF678350
Uniprot ID Q6TKT8_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2.2e-66 488..799
IcmF-related_N PF14331.8 1.1e-58 191..435
IcmF_C PF06744.14 7.6e-20 1029..1133
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MPRFKV
Transmembrane helix 7-26 SATWLLTLAWIFLLVWIWWQ
Outside 27-40 GPKWTLYEQHWLAP
Transmembrane helix 41-63 LANRWLATAVWGLIALVWLTWRV
Inside 64-431 MKRLQKLEKQQKQQREEEKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSGKSTLLREGFPSDIVYTPESIRGVEYHPLITPRVGNQAVIFDVDGVLTTPGGDDLLRRRLREHWLGWLMQTRARQPLNGLILTLDLPDLLTADKSRRETLVQNLRQQLQEIRQSLHCRLPVYVVLTRLDLLNGFAALFHSLDKKDRDAILGVTFTRRAHESDGWRSELGAFWQTWVQQVNLALSDLVLAQTGAAPRSAVFSFSRQMQGTGEIVTALLAALLDGENMDVMLRGVWLTSSLQRGQVDDIFTQSAARQYGLGNSSLATWPLVETTPYFTRRLFPEVLLAEPNLAGENSVWLNSSRRR
Transmembrane helix 432-454 LTAFSTCGAALAALMVGSWHHYY
Outside 455-1155 NQNWQSGVNVLAQAKAFMDVPPPQGTDEFGNLQLPLLNPVRDATLAYGDYRDHGFLADMGLYQGARVGPYVEQTYIQLLEQRYLPSLMNGLIRDLNIAPPESEEKLAVLRVVRMMEDKSGRNNEAVKQYMARRWSNEFHGQRDIQAQLMVHLDYALEHTDWHAQRQSSDSDAVSRWTPYDKPIINAQQELSKLPIYQRVYQTLRTKALSVLPADLNLRDQVGPTFDNVFVAGNDEKLVIPQFLTRYGLQSYFVKQREGLVELTALDSWVLNLTQSVAYSEADREEIQRHITEQYISDYTATWRAGMDNLNVRDYEAMSALTDALEQIISGDQPFQRALTALRDNTHALTLSGKLDDKAREAAINEMDYRLLSRLGHEFAPENSALEEQKDKASTLQAVYQQLTELHRYLLAIQNSPVPGKSALKAVQLRLDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVRYMEVDWRDNVVKPFNEQLADNYPFNPRATQDASLDSFERFFKPDGILDNFYKNNLRLFLENDLTFGDDGRVLIREDIRQQLDTAQKIRDIFFSQQNGLGAQFAVETVSLSGNKRRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGRAPRSIAFSGPWAQFRLFGAGQLTNVTSDTFNVRFNVDGGAMVYQVHVDTEDNPFTGGLFSLFRLPDTLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -


  Protein sequence: 1156 a.a.    

>T6CP011029 KF678350:c5334-1867 [Escherichia coli] [TssM]
MPRFKVSATWLLTLAWIFLLVWIWWQGPKWTLYEQHWLAPLANRWLATAVWGLIALVWLTWRVMKRLQKLEKQQKQQREE
EKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSGKSTLLREGFPSDIVYTPESIRGVEYHPLITPR
VGNQAVIFDVDGVLTTPGGDDLLRRRLREHWLGWLMQTRARQPLNGLILTLDLPDLLTADKSRRETLVQNLRQQLQEIRQ
SLHCRLPVYVVLTRLDLLNGFAALFHSLDKKDRDAILGVTFTRRAHESDGWRSELGAFWQTWVQQVNLALSDLVLAQTGA
APRSAVFSFSRQMQGTGEIVTALLAALLDGENMDVMLRGVWLTSSLQRGQVDDIFTQSAARQYGLGNSSLATWPLVETTP
YFTRRLFPEVLLAEPNLAGENSVWLNSSRRRLTAFSTCGAALAALMVGSWHHYYNQNWQSGVNVLAQAKAFMDVPPPQGT
DEFGNLQLPLLNPVRDATLAYGDYRDHGFLADMGLYQGARVGPYVEQTYIQLLEQRYLPSLMNGLIRDLNIAPPESEEKL
AVLRVVRMMEDKSGRNNEAVKQYMARRWSNEFHGQRDIQAQLMVHLDYALEHTDWHAQRQSSDSDAVSRWTPYDKPIINA
QQELSKLPIYQRVYQTLRTKALSVLPADLNLRDQVGPTFDNVFVAGNDEKLVIPQFLTRYGLQSYFVKQREGLVELTALD
SWVLNLTQSVAYSEADREEIQRHITEQYISDYTATWRAGMDNLNVRDYEAMSALTDALEQIISGDQPFQRALTALRDNTH
ALTLSGKLDDKAREAAINEMDYRLLSRLGHEFAPENSALEEQKDKASTLQAVYQQLTELHRYLLAIQNSPVPGKSALKAV
QLRLDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVRYMEVDWRDNVVKPFNEQLADNYPFNPRATQDAS
LDSFERFFKPDGILDNFYKNNLRLFLENDLTFGDDGRVLIREDIRQQLDTAQKIRDIFFSQQNGLGAQFAVETVSLSGNK
RRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGRAPRSIAFSGPWAQFRLFGAGQLTNVTSDTFNVRF
NVDGGAMVYQVHVDTEDNPFTGGLFSLFRLPDTLY*

  Nucleotide sequence: 3468 bp    

>T6CP011029 KF678350:c5334-1867 [Escherichia coli] [TssM]
ATGCCGCGGTTTAAAGTTTCCGCCACCTGGCTACTGACGCTGGCATGGATTTTTCTGCTGGTGTGGATCTGGTGGCAGGG
TCCAAAATGGACGCTCTATGAGCAGCACTGGCTGGCTCCGCTGGCAAACCGCTGGCTGGCGACCGCCGTCTGGGGACTTA
TCGCTCTGGTCTGGCTCACCTGGCGGGTGATGAAGCGTCTGCAAAAGCTGGAAAAACAGCAGAAACAGCAGCGGGAGGAA
GAAAAAGATCCGTTGACCGTGGAACTCCACCGCCAGCAGCAATATCTGGATCACTGGCTGCTGCGCCTGCGCCGCCATCT
GGATAACCGCCGTTATCTGTGGCAGTTGCCGTGGTATATGGTCATTGGTCCTGCGGGTAGCGGCAAAAGCACGCTGCTGC
GCGAGGGCTTTCCGTCTGACATTGTTTACACGCCGGAAAGCATCCGGGGTGTGGAATACCACCCGCTGATCACACCGCGA
GTGGGCAACCAGGCGGTAATTTTCGATGTTGACGGCGTACTGACCACTCCCGGCGGGGATGATCTGCTCCGCCGCCGCCT
GCGCGAACACTGGCTGGGCTGGCTGATGCAAACGCGCGCTCGCCAGCCGCTCAACGGTCTTATCCTGACGCTCGATCTTC
CCGATCTGCTGACGGCGGATAAATCCCGCCGTGAGACACTGGTACAAAATTTGCGCCAGCAACTTCAGGAGATCCGTCAG
AGCCTGCACTGCCGTCTGCCCGTTTACGTGGTGCTGACACGGCTGGATCTGCTGAACGGCTTTGCCGCGCTGTTCCATTC
ACTGGATAAAAAAGACCGCGATGCGATCCTCGGCGTCACATTTACCCGCCGCGCCCATGAAAGTGACGGCTGGCGCAGCG
AACTGGGGGCTTTCTGGCAGACGTGGGTACAACAGGTGAACCTGGCGCTGTCGGATCTGGTGCTCGCACAAACCGGTGCT
GCTCCCCGCAGCGCTGTGTTCAGCTTCTCCCGTCAGATGCAGGGAACAGGAGAAATCGTCACCGCACTGCTCGCCGCATT
GCTGGACGGTGAGAACATGGATGTAATGCTGCGTGGCGTCTGGCTCACATCCTCGCTACAGCGTGGCCAGGTGGATGATA
TTTTCACGCAGTCCGCCGCCCGCCAGTACGGACTGGGTAACAGCTCGCTGGCAACCTGGCCTCTGGTGGAGACGACGCCG
TATTTTACTCGCCGCCTCTTCCCGGAAGTCCTGCTGGCTGAGCCGAACCTGGCGGGTGAAAACAGCGTCTGGCTGAACAG
CTCCCGGCGCAGGCTGACCGCCTTTTCCACCTGTGGCGCGGCACTGGCGGCATTGATGGTCGGAAGCTGGCACCATTATT
ACAATCAGAACTGGCAGTCTGGCGTTAACGTACTGGCACAAGCTAAAGCCTTTATGGACGTACCACCACCGCAGGGAACG
GATGAATTCGGCAATCTGCAATTGCCATTGCTTAACCCGGTACGCGATGCCACCCTGGCCTATGGTGATTATCGCGATCA
CGGTTTTCTGGCGGATATGGGATTGTACCAGGGCGCCCGCGTAGGGCCGTATGTGGAGCAAACCTACATTCAGCTTCTTG
AGCAGCGTTATCTCCCCTCGTTAATGAACGGCCTGATCCGGGATCTAAACATTGCCCCGCCAGAGAGCGAAGAAAAGCTC
GCTGTGCTGCGCGTAGTGCGCATGATGGAAGACAAAAGTGGGCGCAACAACGAGGCGGTAAAACAGTACATGGCACGGCG
CTGGAGCAATGAATTTCACGGCCAGCGCGATATTCAGGCGCAACTGATGGTGCATCTGGACTATGCGCTGGAGCACACCG
ACTGGCACGCGCAGCGCCAAAGCAGCGACAGCGATGCTGTCAGCCGCTGGACCCCCTATGATAAACCGATCATTAATGCG
CAGCAGGAACTGAGCAAGCTGCCCATATACCAGCGTGTCTACCAGACCCTGCGCACCAAAGCATTAAGCGTGTTGCCCGC
CGATTTGAATTTGCGCGACCAGGTTGGTCCCACCTTCGACAACGTGTTCGTCGCCGGTAATGATGAAAAACTGGTGATCC
CGCAGTTCCTCACCCGCTATGGACTGCAAAGCTATTTTGTCAAACAGCGTGAGGGCCTCGTTGAGCTGACCGCGCTGGAT
TCGTGGGTACTGAACCTGACGCAAAGCGTCGCCTACAGCGAGGCCGACCGTGAAGAGATCCAGCGCCATATCACCGAACA
GTACATCAGTGACTATACCGCCACCTGGCGTGCCGGAATGGATAACCTCAACGTCCGTGACTATGAGGCCATGTCGGCGC
TGACCGACGCGCTGGAGCAGATTATCAGCGGCGATCAGCCATTCCAGCGTGCGCTGACGGCGCTGCGCGATAATACCCAC
GCGCTGACGCTCTCCGGCAAACTGGATGATAAGGCGAGGGAAGCGGCGATAAATGAGATGGATTACCGCCTGTTATCCCG
GCTGGGGCATGAGTTCGCACCGGAAAACAGCGCACTGGAGGAGCAAAAGGACAAGGCGAGTACGCTACAGGCCGTGTACC
AGCAACTGACCGAGCTGCACCGTTACCTGCTGGCGATCCAGAACTCGCCAGTGCCGGGGAAATCGGCGCTGAAAGCAGTA
CAGCTACGGCTGGATCAAAACAGCAGCGATCCAATCTTCGCCACCCGTCAGATGGCAAAAACCCTGCCTGCGCCTCTTAA
CCGCTGGGTAGGTAAGCTCGCGGATCAGGCCTGGCATGTGGTGATGGTGGAAGCCGTTCGTTACATGGAAGTGGACTGGC
GCGACAATGTAGTGAAACCCTTCAACGAGCAGCTTGCCGATAACTATCCGTTTAATCCGCGCGCCACACAGGATGCCTCA
CTGGATTCGTTTGAACGTTTCTTTAAACCGGATGGCATTCTGGACAATTTCTACAAGAACAACCTGCGCCTGTTCCTTGA
AAACGATCTGACCTTTGGCGACGACGGCAGAGTGTTAATCCGTGAAGATATCCGGCAGCAACTGGATACCGCGCAGAAAA
TCCGCGACATCTTCTTCAGCCAGCAGAACGGGCTGGGCGCACAGTTTGCCGTGGAAACCGTATCGCTTTCCGGCAATAAG
CGGCGCAGCGTACTTAACCTGGACGGCCAGTTAGTGGACTACAGCCAGGGACGCAACTACACCGCCCATCTGGTCTGGCC
GAACAACATGCGTGAAGGCAATGAAAGCAAGCTGACGCTGATTGGCACCAGCGGCAGAGCACCGCGCAGTATCGCGTTCA
GTGGACCGTGGGCGCAGTTCCGCCTGTTCGGCGCGGGCCAGTTGACCAATGTGACCAGTGACACCTTTAACGTGCGCTTT
AACGTGGACGGCGGCGCAATGGTTTACCAGGTGCATGTGGATACCGAAGATAACCCGTTCACCGGCGGTCTGTTCAGCCT
GTTCCGTTTACCGGATACGTTGTATTAA