Detailed information of component protein


Summary

Component ID T6CP011028
Component protein type TssA
T6SS ID (Type) T6SS00905 experimental (Type i1)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (481 a.a.); Nucleotide sequence (1443 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 498..1940 (-)
NCBI ID 611963704
GenBank KF678350
Uniprot ID Q6TKT7_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 1.4e-24 316..461
ImpA_N PF06812.14 2.3e-20 40..141
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-480 MWIPKITRSPAVCSACSVYRIRCIKGIVMSNYALTQTIVTGSDPRALPEFSAIREEINKANHPSQPELNWKLVESLALSIFKANGVDLHTATYYTLARTRNQGLAGFCEGAELLAAMIIHEWDKFWPQSGPARTEMLDWFNTRTGNILRQQVSFSENDLSLLYRTERALQLICDKLQQVELKRQPRVENLLYFVQNTRKRFEPQPRNRTDTAAQTMVRTLVYAPEGTASATAETMPPLPDLPEMRVGVRGVADNADKAKQGDTVKGFVAGAACTAVIASALWWWQAYPMQQQLTQVRDTTQGAATVWLASPVLKEYEQYLQQLLNAPPLQPLETGMQMMRTADTLWPESLQQQEASRMWSNTLRNRAQASPQMKGWQQARQNLRDFADLMMKKETEKQGFTLSYIKTVTWQAERLLNQETPLEYLLTQYQETRTQKQDTQALEKEINERLDGLLSRWLLLKNTGQDMATDNRTEPVHPTH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6702 - -


  Protein sequence: 481 a.a.    

>T6CP011028 KF678350:c1940-498 [Escherichia coli] [TssA]
MWIPKITRSPAVCSACSVYRIRCIKGIVMSNYALTQTIVTGSDPRALPEFSAIREEINKANHPSQPELNWKLVESLALSI
FKANGVDLHTATYYTLARTRNQGLAGFCEGAELLAAMIIHEWDKFWPQSGPARTEMLDWFNTRTGNILRQQVSFSENDLS
LLYRTERALQLICDKLQQVELKRQPRVENLLYFVQNTRKRFEPQPRNRTDTAAQTMVRTLVYAPEGTASATAETMPPLPD
LPEMRVGVRGVADNADKAKQGDTVKGFVAGAACTAVIASALWWWQAYPMQQQLTQVRDTTQGAATVWLASPVLKEYEQYL
QQLLNAPPLQPLETGMQMMRTADTLWPESLQQQEASRMWSNTLRNRAQASPQMKGWQQARQNLRDFADLMMKKETEKQGF
TLSYIKTVTWQAERLLNQETPLEYLLTQYQETRTQKQDTQALEKEINERLDGLLSRWLLLKNTGQDMATDNRTEPVHPTH
*

  Nucleotide sequence: 1443 bp    

>T6CP011028 KF678350:c1940-498 [Escherichia coli] [TssA]
ATGTGGATACCGAAGATAACCCGTTCACCGGCGGTCTGTTCAGCCTGTTCCGTTTACCGGATACGTTGTATTAAGGGGAT
AGTGATGAGCAATTACGCACTGACACAAACTATCGTTACCGGCAGCGATCCGCGCGCCCTGCCGGAGTTCAGCGCCATCC
GCGAAGAAATTAACAAAGCTAACCACCCGTCACAGCCGGAGCTGAACTGGAAACTGGTGGAATCGCTGGCGCTGTCGATT
TTTAAGGCCAACGGGGTGGATTTGCATACCGCCACCTACTATACGCTGGCACGTACACGTAATCAGGGACTGGCAGGGTT
CTGTGAAGGCGCGGAACTGCTGGCTGCGATGATCATCCACGAATGGGATAAATTCTGGCCGCAGAGTGGTCCGGCGCGGA
CTGAGATGCTGGACTGGTTCAACACCCGCACCGGGAATATCCTGCGCCAGCAGGTTTCCTTTTCCGAAAATGATCTTTCG
TTGCTCTACCGCACGGAACGGGCTTTGCAGCTTATCTGCGACAAACTCCAGCAAGTGGAACTGAAGCGCCAGCCGCGCGT
GGAAAATCTGCTTTATTTTGTGCAGAACACACGCAAGCGGTTTGAGCCGCAGCCCAGAAACCGTACTGATACGGCGGCAC
AGACCATGGTCAGAACGCTGGTCTATGCGCCTGAAGGCACGGCTTCCGCCACAGCGGAAACCATGCCCCCCCTACCCGAC
CTGCCGGAAATGCGGGTGGGGGTGCGCGGTGTGGCAGATAACGCCGACAAAGCAAAACAGGGCGACACGGTAAAAGGTTT
TGTTGCCGGTGCCGCCTGTACTGCCGTTATCGCATCTGCACTCTGGTGGTGGCAGGCGTATCCGATGCAGCAGCAGCTTA
CACAGGTCAGGGATACCACACAGGGAGCCGCCACCGTCTGGTTGGCATCCCCGGTACTGAAAGAATATGAACAGTACCTG
CAACAGCTTCTGAATGCCCCGCCACTACAGCCGCTGGAAACCGGAATGCAGATGATGCGCACCGCAGACACCCTCTGGCC
GGAAAGCCTGCAACAGCAGGAAGCCAGCAGGATGTGGAGCAACACGCTGAGAAACCGGGCGCAAGCCAGTCCGCAGATGA
AGGGCTGGCAACAAGCGCGGCAGAATTTGCGGGATTTTGCAGATTTGATGATGAAGAAGGAGACGGAGAAACAGGGTTTC
ACCCTATCGTATATCAAAACGGTGACCTGGCAGGCCGAACGGTTACTGAATCAAGAAACACCACTGGAGTACCTGCTGAC
GCAGTACCAGGAGACCCGTACACAGAAGCAGGACACACAGGCGTTGGAAAAAGAGATCAACGAACGGCTGGACGGGCTGT
TAAGCCGCTGGCTGCTGCTGAAAAATACCGGACAGGATATGGCAACGGATAACAGAACCGAACCTGTCCATCCAACTCAT
TGA