Detailed information of component protein
Summary
| Component ID | T6CP011025 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00904  (Type i2) |
| Strain | Escherichia coli strain TW-XM |
| Replicon | chromosome |
| Sequence | Protein sequence (143 a.a.); Nucleotide sequence (429 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 27950..28378 (+) |
| NCBI ID | 611963700 |
| GenBank | KF678349 |
| Uniprot ID | E2QQS9_ECOLX |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 5.1e-12 | 31..112 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-142 | MSTPSLYEMLTFSFSGELPLEQISERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSLIHQGMAAGIHGLMRQIEETLLRYEPRLSQIQVELLPQPRPGHLNYLIHAQLPDTGWIRFDGVFSPEGRIVLRHLKQQERAY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9888 | - | - |
Protein sequence: 143 a.a.
>T6CP011025 KF678349:27950-28378 [Escherichia coli] [TssE]
MSTPSLYEMLTFSFSGELPLEQISERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSLIHQGMAAGIHGLMRQIEET
LLRYEPRLSQIQVELLPQPRPGHLNYLIHAQLPDTGWIRFDGVFSPEGRIVLRHLKQQERAY*
MSTPSLYEMLTFSFSGELPLEQISERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSLIHQGMAAGIHGLMRQIEET
LLRYEPRLSQIQVELLPQPRPGHLNYLIHAQLPDTGWIRFDGVFSPEGRIVLRHLKQQERAY*
Nucleotide sequence: 429 bp
>T6CP011025 KF678349:27950-28378 [Escherichia coli] [TssE]
ATGTCGACACCTTCCTTATATGAAATGCTGACGTTCAGTTTCAGCGGCGAGTTACCGCTGGAACAGATCAGCGAGCGGGA
TCAGCTTATCCTTTCCGTGATGGACAATATGCAACGCATTATCAACTGCCGGGCAGGCACGCTGGCGCATTTGCCGGATT
ACGGTCTGCCGGATCTCAGTCTGATCCATCAGGGGATGGCTGCGGGTATTCATGGCCTGATGCGTCAGATTGAAGAAACA
CTGCTGCGTTATGAACCACGCCTGAGTCAGATACAGGTGGAATTACTCCCCCAGCCCCGTCCGGGGCATCTTAATTACCT
GATCCACGCGCAGCTTCCCGATACCGGCTGGATACGCTTTGATGGCGTATTTTCTCCGGAAGGACGAATTGTTCTGCGTC
ATCTCAAACAGCAGGAGCGGGCGTACTGA
ATGTCGACACCTTCCTTATATGAAATGCTGACGTTCAGTTTCAGCGGCGAGTTACCGCTGGAACAGATCAGCGAGCGGGA
TCAGCTTATCCTTTCCGTGATGGACAATATGCAACGCATTATCAACTGCCGGGCAGGCACGCTGGCGCATTTGCCGGATT
ACGGTCTGCCGGATCTCAGTCTGATCCATCAGGGGATGGCTGCGGGTATTCATGGCCTGATGCGTCAGATTGAAGAAACA
CTGCTGCGTTATGAACCACGCCTGAGTCAGATACAGGTGGAATTACTCCCCCAGCCCCGTCCGGGGCATCTTAATTACCT
GATCCACGCGCAGCTTCCCGATACCGGCTGGATACGCTTTGATGGCGTATTTTCTCCGGAAGGACGAATTGTTCTGCGTC
ATCTCAAACAGCAGGAGCGGGCGTACTGA