Detailed information of component protein


Summary

Component ID T6CP011019
Component protein type TssI
T6SS ID (Type) T6SS00904 experimental (Type i2)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (827 a.a.); Nucleotide sequence (2481 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 9178..11658 (+)
NCBI ID 611963686
GenBank KF678349
Uniprot ID X5FDR6_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 7.9e-59 30..345
DUF2345 PF10106.11 3.8e-48 604..748
T6SS_Vgr PF13296.8 2e-35 484..583
Phage_base_V PF04717.14 1.5e-08 397..463
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-826 MGIQNFDHSHHKLKIRGLKSPVDVLTFTGHEQLSSPFRYDIQFTSSDKAIAPESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKHLSSSQDEARYEVRLEPRMALLTRSRQNAIYQNQTVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVMQYGEDDLTFVSRLLSEVGIWFRFATDARLKIEVIEFYDDQSGYERGLTLPLRHPSGLFDGETEAVWGLNTAYSVVEKNVTTRDYNYRTATAEMMTEQHDATGGDNTTYGEAYHYADNFLQKGDKEAAESGAFYARIRHERYLNEQAILKGQSTSSLLMPGLEIRVQGDDAPAVFRKGVLITGVTASAARDRSYELTFTAIPYSERYGYRPALIPRPVMAGTLPARVTSTVKNDIYAHIDKDGRYRVNLDFDRDAWKPGYESLWVRQSRPYAGDTYGLHLPLLAGTEVSIAFEEGNPGRPYIAGVKHDSAHTDHVTIQNYKRNVLRTPANNKIRLDDERGKEHIKVSTEYGGKSQLNLGHLVDAGKQQRGEGFELRTDMWGAVRAKKGIFISADAQDKAQGQVLDMTDALAQLREAQSLVEALCSATEVAKAELADLQTQKVMMSEALEELKKSAMLLSAPEGIAQVTPKSLQLSAGENIISTSGKNSDFSVLKKFTVAAGETVSLFAQKLGIKIFAGKGKVEIQAQGDEMLLDALKDIRISSSEGRILISAKNEIILTSGGGYIRIGDGTVECAAPDKIIERGAVWQKFSGQSISQAMQQWDSADFAVTPEILWQQTGKPAKNQKVQVTRGDGSVVEMTTDEQGRLPIQSGLFVESIKIDLPDSQEN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -


  Protein sequence: 827 a.a.    

>T6CP011019 KF678349:9178-11658 [Escherichia coli] [TssI]
MGIQNFDHSHHKLKIRGLKSPVDVLTFTGHEQLSSPFRYDIQFTSSDKAIAPESVLMQDGAFSLTAPPVQGMPVQTALRT
LHGVITGFKHLSSSQDEARYEVRLEPRMALLTRSRQNAIYQNQTVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVMQ
YGEDDLTFVSRLLSEVGIWFRFATDARLKIEVIEFYDDQSGYERGLTLPLRHPSGLFDGETEAVWGLNTAYSVVEKNVTT
RDYNYRTATAEMMTEQHDATGGDNTTYGEAYHYADNFLQKGDKEAAESGAFYARIRHERYLNEQAILKGQSTSSLLMPGL
EIRVQGDDAPAVFRKGVLITGVTASAARDRSYELTFTAIPYSERYGYRPALIPRPVMAGTLPARVTSTVKNDIYAHIDKD
GRYRVNLDFDRDAWKPGYESLWVRQSRPYAGDTYGLHLPLLAGTEVSIAFEEGNPGRPYIAGVKHDSAHTDHVTIQNYKR
NVLRTPANNKIRLDDERGKEHIKVSTEYGGKSQLNLGHLVDAGKQQRGEGFELRTDMWGAVRAKKGIFISADAQDKAQGQ
VLDMTDALAQLREAQSLVEALCSATEVAKAELADLQTQKVMMSEALEELKKSAMLLSAPEGIAQVTPKSLQLSAGENIIS
TSGKNSDFSVLKKFTVAAGETVSLFAQKLGIKIFAGKGKVEIQAQGDEMLLDALKDIRISSSEGRILISAKNEIILTSGG
GYIRIGDGTVECAAPDKIIERGAVWQKFSGQSISQAMQQWDSADFAVTPEILWQQTGKPAKNQKVQVTRGDGSVVEMTTD
EQGRLPIQSGLFVESIKIDLPDSQEN*

  Nucleotide sequence: 2481 bp    

>T6CP011019 KF678349:9178-11658 [Escherichia coli] [TssI]
ATGGGTATTCAGAATTTCGACCACTCACACCACAAGCTCAAAATTCGCGGCCTGAAAAGCCCGGTGGACGTGCTGACTTT
TACAGGCCACGAACAGCTCAGCTCACCCTTCCGCTACGACATTCAGTTTACCAGCAGCGATAAAGCCATCGCGCCGGAAT
CGGTGCTGATGCAGGACGGCGCATTCAGCCTGACGGCACCGCCCGTACAGGGAATGCCGGTACAGACTGCCCTGCGCACC
CTGCACGGCGTCATTACCGGCTTTAAACATCTCTCATCGTCACAGGACGAAGCCCGTTACGAAGTGCGCCTTGAACCCCG
TATGGCGCTGCTTACCCGCAGCCGCCAGAACGCCATCTACCAGAACCAGACGGTGCCGCAAATCGTCGAAAAAATCCTGC
GCGAGCGACACCAGATGCGCGGTCAGGACTTCGTGTTTAACCTCAAAAGCGAATACCCGGCCCGCGAACAGGTGATGCAG
TATGGCGAGGACGACCTGACGTTTGTCTCACGCCTGCTGTCGGAAGTGGGTATCTGGTTCCGCTTCGCCACCGACGCCCG
GCTGAAAATCGAAGTTATCGAATTTTACGACGACCAGAGCGGCTATGAGCGCGGGCTGACGCTGCCGCTTCGCCATCCTT
CTGGGCTGTTTGATGGTGAAACGGAAGCCGTATGGGGGCTGAACACGGCATACAGCGTGGTGGAGAAAAACGTCACCACG
CGGGACTACAACTACCGCACCGCCACAGCGGAGATGATGACAGAGCAGCATGACGCCACCGGGGGCGATAACACCACCTA
CGGCGAAGCCTACCACTATGCTGACAACTTCCTGCAAAAAGGCGATAAAGAGGCAGCGGAAAGCGGCGCGTTTTATGCCC
GTATCCGCCACGAACGCTACCTGAATGAACAGGCCATTCTCAAAGGCCAGAGCACCAGTTCACTGCTGATGCCGGGGCTG
GAAATCAGGGTTCAGGGCGACGACGCGCCAGCGGTGTTCCGCAAGGGTGTGCTGATTACCGGCGTGACGGCCAGCGCGGC
GCGTGACCGCAGCTATGAACTGACGTTCACGGCGATACCCTACTCAGAACGCTACGGCTACCGCCCGGCGCTTATCCCCC
GCCCGGTAATGGCCGGCACGCTCCCGGCGCGGGTCACCAGCACGGTGAAGAACGATATTTATGCCCATATCGACAAGGAC
GGGCGCTACCGGGTCAATCTCGACTTTGACCGCGACGCATGGAAACCGGGTTATGAAAGCCTGTGGGTACGCCAGTCGCG
CCCGTATGCGGGAGACACCTACGGCCTGCACCTGCCGCTGCTGGCGGGAACGGAGGTCAGCATCGCCTTTGAGGAAGGCA
ACCCGGGCCGACCTTATATTGCAGGCGTAAAACACGACTCGGCGCACACCGACCATGTGACCATTCAGAACTACAAGCGC
AACGTACTGCGTACCCCGGCCAACAACAAAATCCGGCTGGATGACGAACGCGGGAAGGAGCATATCAAGGTCAGCACCGA
ATACGGCGGCAAGAGCCAGCTAAACCTCGGTCATCTGGTGGATGCCGGGAAACAGCAGCGCGGGGAAGGCTTTGAACTGC
GTACCGATATGTGGGGCGCAGTGCGGGCGAAGAAAGGGATTTTTATCAGCGCCGATGCGCAGGACAAGGCGCAGGGTCAG
GTTCTGGATATGACTGATGCACTAGCTCAACTTCGCGAGGCACAGTCTTTGGTAGAGGCACTATGTAGTGCTACTGAAGT
GGCAAAGGCTGAACTTGCAGATTTGCAGACTCAGAAAGTAATGATGTCAGAGGCTCTGGAGGAACTCAAAAAATCAGCGA
TGTTGCTTTCGGCTCCGGAAGGAATAGCTCAGGTTACGCCAAAAAGCCTGCAGCTGTCCGCAGGAGAAAACATCATTAGC
ACCAGTGGAAAAAATTCAGATTTCAGCGTGTTGAAGAAGTTTACCGTTGCTGCTGGAGAAACGGTAAGTCTGTTTGCCCA
AAAGCTGGGGATAAAAATTTTTGCCGGTAAGGGAAAAGTAGAGATTCAGGCGCAGGGAGATGAAATGTTGCTAGATGCGC
TGAAAGATATCCGCATCAGCAGCAGTGAGGGGCGAATCCTTATTAGCGCAAAAAACGAAATCATTCTGACCAGCGGCGGC
GGATATATTCGTATTGGTGATGGTACGGTGGAATGCGCAGCCCCAGACAAGATCATAGAGCGTGGGGCCGTATGGCAGAA
GTTCAGCGGCCAGAGCATCAGTCAGGCGATGCAACAGTGGGATTCTGCTGATTTTGCTGTCACACCAGAAATACTCTGGC
AACAAACTGGCAAACCTGCAAAAAATCAAAAGGTACAGGTCACACGGGGTGATGGCTCAGTGGTGGAAATGACCACCGAT
GAACAAGGACGATTGCCCATACAGTCAGGGCTTTTCGTTGAGTCAATAAAAATTGATCTGCCGGATAGTCAGGAAAACTG
A