Detailed information of component protein


Summary

Component ID T6CP011018
Component protein type TssH
T6SS ID (Type) T6SS00904 experimental (Type i2)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (882 a.a.); Nucleotide sequence (2646 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 6521..9166 (+)
NCBI ID 611963685
GenBank KF678349
Uniprot ID X5FED1_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.3e-38 609..774
AAA_lid_9 PF17871.3 5.4e-30 380..471
ClpB_D2-small PF10431.11 7.6e-14 780..855
AAA PF00004.31 1.2e-09 240..352
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-881 MTGNHPAALLRRLNPYCARALDAAASLCQTRAHAEITIEHWLLKLLEQGEGDITVIARRYEWDIDTLWQSLLAHLDTLPRSVRERPQLSEPLTALIRQAWLIASLEGDDPQIRSQHLLMALTEKSMLPACNDLWVLLSLSRVQLERLRPLLDAQSDECPARQPQVTEPLTSALPETATADAPAKTLTEKQDDALLAVLNRFTEDVTEKARSGRIDPVFGRDTEIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLALRITEGNVPDSLKTVHIRTLDLGLLQAGAGVKGEFEQRLKNVIDAVQKSPEPVLLFIDEAHTIIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKARYAQHHGVHMLDSAIQTAVRLSRRYLTGRQLPDKAVDLLDTAGARVRMSLDTLPEPLTQLHARLAALDIEREAIEQDSVFYPEASPERLAELTDLRDELQAEAGHLEAQYQQEKALAQQIMTLRQEGTDSTELQQQLRTHQGFAPLLALDVDARAVATVVADWTGIPLSSLLRDEQSDLLSMEQSLENRVVGQRPALCAIAQRLRAAKTGLTPENGPQGVFLLTGPSGTGKTETALTLADTLFGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGVLTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGREIDFRNTVILMTANLGSDHIMQLLEEKPDATDADLHELLYPLLRDHFQPALMARFQTVIYRPLGQEAMRTIVEMKLAQVVRRLHQHYGLETEINDSLYDQLTAACLLPDTGARNIDSLLNQQILPVLSQQLLAQQAAHRKPAQLRLGWDEEDGIVLEFATEEMQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7402 - -


  Protein sequence: 882 a.a.    

>T6CP011018 KF678349:6521-9166 [Escherichia coli] [TssH]
MTGNHPAALLRRLNPYCARALDAAASLCQTRAHAEITIEHWLLKLLEQGEGDITVIARRYEWDIDTLWQSLLAHLDTLPR
SVRERPQLSEPLTALIRQAWLIASLEGDDPQIRSQHLLMALTEKSMLPACNDLWVLLSLSRVQLERLRPLLDAQSDECPA
RQPQVTEPLTSALPETATADAPAKTLTEKQDDALLAVLNRFTEDVTEKARSGRIDPVFGRDTEIRQMVDILSRRRKNNPI
LVGEPGVGKTALVEGLALRITEGNVPDSLKTVHIRTLDLGLLQAGAGVKGEFEQRLKNVIDAVQKSPEPVLLFIDEAHTI
IGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKARYAQHHGV
HMLDSAIQTAVRLSRRYLTGRQLPDKAVDLLDTAGARVRMSLDTLPEPLTQLHARLAALDIEREAIEQDSVFYPEASPER
LAELTDLRDELQAEAGHLEAQYQQEKALAQQIMTLRQEGTDSTELQQQLRTHQGFAPLLALDVDARAVATVVADWTGIPL
SSLLRDEQSDLLSMEQSLENRVVGQRPALCAIAQRLRAAKTGLTPENGPQGVFLLTGPSGTGKTETALTLADTLFGGEKS
LITINLSEYQEPHTVSQLKGSPPGYVGYGQGGVLTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGREID
FRNTVILMTANLGSDHIMQLLEEKPDATDADLHELLYPLLRDHFQPALMARFQTVIYRPLGQEAMRTIVEMKLAQVVRRL
HQHYGLETEINDSLYDQLTAACLLPDTGARNIDSLLNQQILPVLSQQLLAQQAAHRKPAQLRLGWDEEDGIVLEFATEEM
Q*

  Nucleotide sequence: 2646 bp    

>T6CP011018 KF678349:6521-9166 [Escherichia coli] [TssH]
ATGACAGGAAATCACCCCGCCGCGCTGCTGCGTCGCCTTAACCCATACTGTGCACGGGCGCTGGACGCTGCCGCCTCACT
GTGTCAGACCCGCGCCCATGCGGAGATAACCATTGAACACTGGCTGCTGAAACTGCTGGAGCAGGGAGAAGGCGATATCA
CGGTGATTGCCCGCCGCTATGAATGGGATATCGACACGCTCTGGCAGTCTCTGCTGGCACATCTGGACACCTTACCCCGC
TCGGTCCGCGAACGTCCGCAGCTTTCTGAACCCCTGACGGCGCTTATCAGGCAGGCGTGGCTGATTGCCTCGCTGGAAGG
CGACGACCCGCAAATCCGCAGTCAGCACCTGCTGATGGCGCTGACAGAAAAATCGATGCTGCCCGCCTGTAATGACCTGT
GGGTATTGCTGAGTCTGAGCCGCGTGCAGCTTGAGCGGCTGCGTCCCCTGCTGGATGCGCAGTCGGATGAATGTCCGGCA
CGTCAGCCACAGGTCACCGAACCGCTGACCTCTGCACTGCCGGAGACGGCAACGGCGGACGCACCGGCAAAAACGCTGAC
GGAGAAACAGGATGACGCCCTGCTGGCGGTGCTTAACCGCTTTACCGAAGACGTGACGGAAAAAGCCCGCAGCGGGCGAA
TCGACCCGGTATTCGGGCGCGACACGGAAATTCGCCAGATGGTCGATATCCTCTCCCGTCGCCGCAAAAACAACCCGATT
CTGGTGGGAGAACCGGGGGTGGGCAAAACCGCGCTGGTGGAAGGGCTGGCGCTGCGTATCACCGAAGGCAACGTGCCGGA
CAGCCTGAAAACGGTGCATATCCGCACACTGGACCTCGGTCTGTTACAGGCTGGCGCGGGCGTTAAAGGTGAATTTGAAC
AGCGGCTGAAAAATGTCATCGATGCAGTGCAGAAATCACCGGAGCCGGTACTGCTGTTTATTGATGAAGCCCATACCATT
ATCGGTGCGGGTAATCAGGCAGGCGGCGCGGATGCGGCGAACCTGCTGAAACCGGCACTGGCAAGGGGCGAACTGCGCAC
CATCGCGGCGACCACGTGGAGCGAATACAAACAGTATTTTGAGCGCGACGCCGCGCTGGAGCGCCGCTTCCAGATGGTTA
AGGTTGACGAGCCGGATGATGACACCGCCTGTCTGATGCTGCGGGGACTGAAGGCTCGCTATGCACAGCACCACGGCGTG
CATATGCTGGACAGCGCCATTCAGACCGCCGTGCGCCTGTCGCGCCGCTATCTGACCGGACGCCAGCTGCCGGACAAGGC
GGTTGATTTGCTGGATACCGCCGGGGCAAGAGTCCGCATGAGCCTTGACACCCTGCCGGAACCGTTGACGCAGCTTCATG
CGCGACTGGCGGCACTGGATATTGAGCGGGAAGCGATTGAGCAGGACAGCGTATTTTATCCCGAAGCCAGCCCGGAGCGG
CTGGCGGAACTGACCGATTTGCGTGATGAGCTACAGGCAGAAGCCGGGCATCTGGAAGCGCAGTATCAGCAGGAAAAGGC
ACTGGCGCAGCAGATTATGACGTTGCGTCAGGAAGGAACAGACAGCACTGAACTGCAACAGCAACTGCGAACGCATCAGG
GCTTTGCACCGCTGCTGGCGCTGGATGTGGACGCCCGCGCCGTCGCTACGGTGGTGGCGGACTGGACCGGCATCCCGCTC
TCATCCCTGCTCAGGGACGAGCAGAGCGATCTGCTCAGTATGGAACAGAGCCTTGAAAACCGCGTGGTCGGGCAACGCCC
GGCGCTCTGCGCCATCGCACAGCGGCTGCGGGCGGCTAAAACCGGCCTCACGCCGGAGAACGGCCCACAGGGGGTATTCC
TGCTGACCGGCCCCAGCGGCACCGGCAAAACCGAAACTGCGCTCACACTGGCCGACACCCTGTTTGGTGGTGAAAAATCC
CTTATCACCATTAATCTTTCGGAATACCAGGAACCGCATACCGTTTCCCAGTTGAAAGGTTCGCCTCCGGGCTATGTCGG
CTACGGTCAGGGCGGCGTACTTACCGAAGCCGTTCGCAAACGCCCTTACAGCGTGGTGCTGCTCGACGAAGTGGAAAAGG
CGCATCGCGACGTGATGAACCTGTTCTATCAGGTGTTCGACCGGGGCTTTATGCGCGACGGCGAAGGGCGGGAAATCGAC
TTCCGCAACACCGTCATTCTGATGACCGCCAATCTGGGCAGCGACCACATCATGCAGCTGCTGGAGGAAAAACCGGACGC
CACGGACGCAGACCTGCATGAACTGCTGTATCCCCTTCTGCGAGACCATTTTCAGCCTGCACTGATGGCGCGTTTTCAGA
CGGTGATTTACCGCCCGCTGGGACAGGAAGCGATGCGCACCATTGTGGAAATGAAACTGGCGCAGGTGGTCCGCCGTCTT
CACCAGCACTACGGACTGGAAACGGAAATCAACGACAGCCTGTATGACCAGCTTACCGCCGCCTGCCTGCTGCCGGACAC
CGGTGCGCGTAATATCGACAGCCTGCTGAACCAGCAAATCCTGCCGGTCTTAAGCCAGCAGTTGCTGGCACAGCAGGCCG
CGCACCGTAAACCAGCCCAACTACGGCTTGGCTGGGATGAGGAGGACGGGATTGTACTGGAGTTCGCTACGGAAGAGATG
CAATAA