Detailed information of component protein


Summary

Component ID T6CP011014
Component protein type TssC
T6SS ID (Type) T6SS00904 experimental (Type i2)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (515 a.a.); Nucleotide sequence (1545 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 554..2098 (+)
NCBI ID 611963680
GenBank KF678349
Uniprot ID X5FWM9_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.2e-119 91..389
VipB_2 PF18945.2 8.4e-39 399..509
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-514 MLMSVQQEHSTSETATLTTTESGGVYQSLFDKINLTPVSSIQEIDLWQNSETLADASPDERVTAAIHVLLSCLAKSGEDVVKLDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFRKNVRIELLDISKEHLRQDFDDSPEIIQSGLYRHTYIQEYDTPGGEPVASLISSYEFDNSPQDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHEKYLWTNASFAFAANMVKSFVNNGWCVQIRGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKIIQRENIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDNPGFFRVRLFAVPHFQIEGMDINLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9841 - -


  Protein sequence: 515 a.a.    

>T6CP011014 KF678349:554-2098 [Escherichia coli] [TssC]
MLMSVQQEHSTSETATLTTTESGGVYQSLFDKINLTPVSSIQEIDLWQNSETLADASPDERVTAAIHVLLSCLAKSGEDV
VKLDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFRKNVRIELLDISKEHLRQDFDDSPEIIQS
GLYRHTYIQEYDTPGGEPVASLISSYEFDNSPQDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFD
RAEYIKWKSFRDTDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHEKYLWTNASFAFAANMVKSFVNNGWCV
QIRGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADAT
ANSRINARLPYIFLLSRIAHYLKIIQRENIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDN
PGFFRVRLFAVPHFQIEGMDINLSLVSQMPKAKA*

  Nucleotide sequence: 1545 bp    

>T6CP011014 KF678349:554-2098 [Escherichia coli] [TssC]
ATGCTGATGTCTGTACAACAAGAACATTCCACCTCTGAAACTGCAACACTCACCACCACTGAGTCCGGCGGCGTTTATCA
GTCCCTGTTCGATAAAATTAATTTAACCCCGGTCTCTTCCATTCAGGAAATAGATTTATGGCAAAACAGCGAAACGCTGG
CTGATGCCTCACCCGATGAGCGCGTGACAGCAGCGATTCACGTTCTGCTTTCCTGTCTGGCGAAATCAGGCGAGGACGTG
GTTAAGCTCGACAAGAGCCTGCTGGATTTTCATATCGACGATCTGGATCAGAAAATCAGTAAACAGCTTGATGCGGTCAT
GCACCACCCTGAATTCCAGAAAGTCGAGTCGCTGTGGCGTGGTACATGGTTCGTCGTACAGCGCACTGATTTTCGCAAAA
ATGTCAGAATTGAATTGCTGGATATCAGCAAAGAGCATCTGCGTCAGGATTTCGACGACTCCCCGGAAATCATTCAGAGC
GGTTTATATCGTCATACATACATTCAGGAGTACGATACGCCGGGTGGCGAACCTGTTGCCTCATTAATTTCCAGCTATGA
ATTTGATAACAGCCCGCAGGATATTGCCCTGCTGCGCAATATTTCCAGAGTGTCTGCCGCTTCCCATATGCCTTTTATCG
GTTCCGTCGGACCGAAATTCTTCCTTAAAAATTCGATGGAAGAAGTCGCCGCGATTAAAGATATCGGCAACTACTTTGAC
CGCGCAGAATATATTAAATGGAAGTCGTTCCGCGATACGGATGACAGCCGCTATGTGGGATTAGTGATGCCGCGAGTGCT
GGGCCGTCTGCCCTATGGGCCGGACACGGTGCCGGTACGCAGCTTTAACTATGTGGAAGAAGTCAAAGGCCCGGATCACG
AAAAGTACCTGTGGACAAACGCCTCGTTCGCCTTTGCCGCCAATATGGTGAAGAGCTTTGTGAATAATGGCTGGTGTGTG
CAGATCCGTGGTCCACAGGCAGGTGGCGCAGTAGCCGATCTGCCCATCCATCTTTACGATCTCGGCACCGGCAATCAGGT
CAAAATTCCGTCCGAAGTGATGATCCCGGAAACCCGCGAATTTGAATTTGCCAACCTTGGCTTTATTCCGCTCTCTTATT
ATAAGAATCGCGATTACGCCTGCTTCTTCTCGGCAAACTCCGCCCAGAAACCGGCGTTGTATGATACCGCTGACGCCACC
GCCAACAGCCGTATTAACGCCCGTCTGCCTTACATCTTCCTGCTGTCCCGCATTGCGCATTACCTGAAAATCATTCAGCG
CGAGAATATCGGTACCACCAAAGACCGCCGCGTACTGGAACTGGAACTGAACACCTGGATCCGTACACTGGTGACGGAGA
TGACCGATCCGGGTGATGAACTGCAGGCGTCTCACCCGCTGCGCGACGGCAAGGTTATCGTGGAAGATATTGAGGACAAT
CCGGGCTTCTTCCGCGTCAGACTCTTTGCCGTGCCGCATTTCCAGATTGAAGGGATGGATATCAACCTTTCTCTGGTTTC
CCAGATGCCGAAAGCGAAAGCCTGA