Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VCV52_RS01060 |
Coordinate (Strand) | 223328..223765 (-) |
NCBI ID | WP_000221001.1 |
RefSeq | NZ_KQ410497 |
Uniprot ID | UPI00005F4E06 |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 6e-17 | 38..124 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-145 | MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVRIKLAIQQCLERYEPRLTRVLVRADQDSFNSLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9889 | - | - |
Protein sequence: 146 a.a.
>T6CP011010 NZ_KQ410497:c223765-223328 [Vibrio cholerae V52] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRVLVRADQDSFNSLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRVLVRADQDSFNSLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*
Nucleotide sequence: 438 bp
>T6CP011010 NZ_KQ410497:c223765-223328 [Vibrio cholerae V52] [TssE]
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGACGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGCGTTCTGGTGAGAGCGGATCAAGATAG
CTTTAACTCGCTGACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTC
TGTTATTGGATCAAAGCAGAAAATATCGAGTGTTTTAA
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGACGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGCGTTCTGGTGAGAGCGGATCAAGATAG
CTTTAACTCGCTGACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTC
TGTTATTGGATCAAAGCAGAAAATATCGAGTGTTTTAA