Detailed information of component protein


Summary

Component ID T6CP010984
Component protein type TssC
T6SS ID (Type) T6SS00787 experimental (Type i1)
Strain Escherichia coli RS218
Replicon chromosome
Sequence Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 18071..19126 (-)
NCBI ID 356875286
GenBank JN837480
Uniprot ID G8IRM7_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.1e-86 8..224
VipB_2 PF18945.2 7.3e-45 238..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-351 MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAYSRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGPSSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAETNYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEPGWYQVAISVRPHFKYMGASFDLSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9781 - -


  Protein sequence: 352 a.a.    

>T6CP010984 JN837480:c19126-18071 [Escherichia coli RS218] [TssC]
MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAY
SRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGP
SSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAET
NYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEP
GWYQVAISVRPHFKYMGASFDLSLVGRLDKE*

  Nucleotide sequence: 1056 bp    

>T6CP010984 JN837480:c19126-18071 [Escherichia coli RS218] [TssC]
ATGTATATTCAAGCGGTTACCGGACAATTTGGCGGTGAGCCAGTGGCGGCGGTAATCGGCAACTTTGCCTTTAAGAACAC
CACGCCGGATATGAAGCTGCTGAAATATATCAGCCAGGTCAGCGCGATGGCGCACAGCCCGTTCCTGTCGTCAGTATCAT
CCGAATTTTTCGGTCTGGATTCATGGACAGAGTTACCGGGGATCAAAGAACCGGGTGCCATCTTTGAAGGCCCGGCCTAC
TCCCGCTGGCGCGCCCTGCGTGAATCGGAAGATTCCCGTTACCTGGGCCTGACCGCCCCCCGGTTCCTGCTGCGCCACCC
TTACTCACCGGATGAAAACCCTGTCAAAACCTTCCGTTACCATGAAGATGTCAGCCAGAGTCATGAGTCTTATCTGTGGG
GGAATACCTCGTTTTTACTGGCCGCCAACCTGGCGGAAAGTTTTGCTAAGTATCGCTGGTGCCCAAATATTATTGGCCCT
TCCAGCGGCGGCGCAGTCAAAGACCTCCCGGTGCATCTGTATGAATCCATGGGGCAAATGCAGGCAAAAATTCCGACTGA
AGTGTTGATCACTGACCGGAGAGAGTATGAGCTGGCGGAAGAGGGCTTTATCACACTGACCATGCGTAAAGGGTCTGATA
ATGCGTGCTTTTTCTCGGCCAACTCGGTGCAGAAACCCAAAACATTCCCCAAAACCCCCGAAGGCAAGGCTGCGGAGACC
AACTATAAACTCGGCACCCAGCTGCCATACTTGTTTGTTATCAGCAGGTTAGCGCATTACATCAAGGTAATTCAGCGCGA
ACAGCTTGGCTCATGGAAAGAACGTAGTGACCTGGAGCGTGAGCTGAACACCTGGATTCGCCAGTATGTTGCTGACCAGG
AAAATCCGCCTGCCGAAGTCCGCAGCCACCGGCCTTTGCGTCAGGCTAAGATCGAGGTACTGGATGTGGATGGTGAGCCG
GGCTGGTACCAGGTCGCGATTTCTGTCAGACCGCATTTTAAATACATGGGTGCCAGTTTCGACCTGAGCCTGGTCGGACG
ACTGGATAAGGAATAA