Detailed information of component protein
Summary
| Component ID | T6CP010983 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00787  (Type i1) |
| Strain | Escherichia coli RS218 |
| Replicon | chromosome |
| Sequence | Protein sequence (142 a.a.); Nucleotide sequence (426 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 17641..18066 (-) |
| NCBI ID | 356875285 |
| GenBank | JN837480 |
| Uniprot ID | G8IRM6_ECOLX |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.3e-14 | 32..119 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-141 | MLRRDSGPTGSLFERIREAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCYGSPELGITDLNDESLASSDFRREIRKSISQCILHYEPRITDVVVTAAAPDEYAPVELCFHIVATVDVSETRGVFEFDILLDNHQRYCVE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9392 | - | - |
Protein sequence: 142 a.a.
>T6CP010983 JN837480:c18066-17641 [Escherichia coli RS218] [TssE]
MLRRDSGPTGSLFERIREAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCYGSPELGITDLNDESLASSDFRREIRKSI
SQCILHYEPRITDVVVTAAAPDEYAPVELCFHIVATVDVSETRGVFEFDILLDNHQRYCVE*
MLRRDSGPTGSLFERIREAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCYGSPELGITDLNDESLASSDFRREIRKSI
SQCILHYEPRITDVVVTAAAPDEYAPVELCFHIVATVDVSETRGVFEFDILLDNHQRYCVE*
Nucleotide sequence: 426 bp
>T6CP010983 JN837480:c18066-17641 [Escherichia coli RS218] [TssE]
ATGCTAAGACGGGATTCAGGACCAACCGGCAGTCTTTTTGAACGTATCCGTGAGGCGGCAAATCCGCCTTCATATCAGAA
TCCAAAAGAAGCACTGATACGTTCCATCAGACGTAACCTGCGACAGGTCCTGAATACCCGCTCCGGCAGTTGTTATGGTT
CACCGGAGCTGGGGATTACTGATTTAAATGATGAATCGCTGGCCTCCAGCGATTTCAGACGAGAAATCCGTAAGTCCATT
AGCCAGTGCATTTTACATTACGAACCTCGTATTACCGATGTTGTTGTTACGGCTGCTGCACCGGATGAATACGCCCCTGT
GGAACTGTGTTTTCATATTGTGGCTACGGTCGATGTCAGCGAAACCAGGGGAGTGTTTGAATTTGACATTTTGCTGGACA
ACCATCAACGCTATTGTGTGGAGTGA
ATGCTAAGACGGGATTCAGGACCAACCGGCAGTCTTTTTGAACGTATCCGTGAGGCGGCAAATCCGCCTTCATATCAGAA
TCCAAAAGAAGCACTGATACGTTCCATCAGACGTAACCTGCGACAGGTCCTGAATACCCGCTCCGGCAGTTGTTATGGTT
CACCGGAGCTGGGGATTACTGATTTAAATGATGAATCGCTGGCCTCCAGCGATTTCAGACGAGAAATCCGTAAGTCCATT
AGCCAGTGCATTTTACATTACGAACCTCGTATTACCGATGTTGTTGTTACGGCTGCTGCACCGGATGAATACGCCCCTGT
GGAACTGTGTTTTCATATTGTGGCTACGGTCGATGTCAGCGAAACCAGGGGAGTGTTTGAATTTGACATTTTGCTGGACA
ACCATCAACGCTATTGTGTGGAGTGA