Detailed information of component protein


Summary

Component ID T6CP010973
Component protein type TssA
T6SS ID (Type) T6SS00787 experimental (Type i1)
Strain Escherichia coli RS218
Replicon chromosome
Sequence Protein sequence (481 a.a.); Nucleotide sequence (1443 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5885..7327 (-)
NCBI ID 356875273
GenBank JN837480
Uniprot ID G8IRL3_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Loading, please wait
Domain
Pfam ID
E-value
Aligned region
T6SS_VasJPF16989.71.9e-70232..476
ImpA_NPF06812.142.7e-0532..112
Showing 1 to 2 of 2 rows
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Loading, please wait
Prediction                
Region    
Sequence
Outside1-480MAMDLRNPDVWLAHLLENLPEDKLSAALDDGNADWEFVDSEIVKLGSLAHSQLDIPELQRRGLMLLASETKDFRLLAHLLRTLQHAGDILLASRMLAQYTEHYWTCAAPQNMAHKKRFAAQVIKRFESAVQDFAGNAATIQRDALLGELAKLAQCWQAHNASELAKATDDLFSLFQRAFRDVAPEMTSSARSAAIAPQATTGYVPDMSPHTVAAQPPVAATPIPQVTVENHDDKAWRDTLLKVAAILCERQPESPQGYRLRRHALWQTITSTPQAESDGRTPLAAFPVDMMDDYLARLNNADMALWQQVEKSLLLAPYWLDGHYLSAQTALRLGYKQVADAIRDEVTDFLARLPALINLLFNDRTPFVSEQTKQWLASSGSVNQTVPVVQTDEELQAAKACFDENGLEAALRYLENLPEGDPRHQFHRQFFGAQLLEEAGMVQLAQQQYRMLFRTGLHMMLSEWEPSLLKALEQKLTAEQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Loading, please wait
Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9960--


  Protein sequence: 481 a.a.    

>T6CP010973 JN837480:c7327-5885 [Escherichia coli RS218] [TssA]
MAMDLRNPDVWLAHLLENLPEDKLSAALDDGNADWEFVDSEIVKLGSLAHSQLDIPELQRRGLMLLASETKDFRLLAHLL
RTLQHAGDILLASRMLAQYTEHYWTCAAPQNMAHKKRFAAQVIKRFESAVQDFAGNAATIQRDALLGELAKLAQCWQAHN
ASELAKATDDLFSLFQRAFRDVAPEMTSSARSAAIAPQATTGYVPDMSPHTVAAQPPVAATPIPQVTVENHDDKAWRDTL
LKVAAILCERQPESPQGYRLRRHALWQTITSTPQAESDGRTPLAAFPVDMMDDYLARLNNADMALWQQVEKSLLLAPYWL
DGHYLSAQTALRLGYKQVADAIRDEVTDFLARLPALINLLFNDRTPFVSEQTKQWLASSGSVNQTVPVVQTDEELQAAKA
CFDENGLEAALRYLENLPEGDPRHQFHRQFFGAQLLEEAGMVQLAQQQYRMLFRTGLHMMLSEWEPSLLKALEQKLTAEQ
*

  Nucleotide sequence: 1443 bp    

>T6CP010973 JN837480:c7327-5885 [Escherichia coli RS218] [TssA]
ATGGCAATGGACTTACGTAATCCCGATGTATGGCTTGCACACCTGCTGGAAAACCTGCCAGAAGATAAGCTGTCCGCCGC
GCTTGATGATGGCAATGCAGACTGGGAGTTTGTCGACAGCGAAATCGTCAAGCTCGGTTCACTGGCGCACAGCCAGCTTG
ATATCCCGGAACTTCAGCGCCGGGGCCTGATGCTTCTGGCCTCAGAAACCAAAGATTTTCGCCTGCTGGCCCACTTGCTG
CGTACCCTGCAACATGCCGGTGATATTCTGCTGGCCTCCAGGATGCTGGCACAATATACAGAGCACTACTGGACATGCGC
CGCACCGCAGAACATGGCCCACAAAAAACGCTTTGCCGCCCAGGTGATAAAACGCTTTGAGTCTGCCGTTCAGGACTTTG
CCGGGAATGCTGCGACAATACAGCGCGATGCTTTGCTGGGAGAGCTGGCAAAACTGGCACAGTGCTGGCAGGCGCACAAC
GCGTCTGAGCTGGCAAAGGCGACAGACGATTTATTTTCCCTGTTTCAGCGCGCGTTTCGTGATGTAGCGCCTGAAATGAC
ATCATCTGCACGAAGCGCCGCCATTGCGCCGCAGGCCACGACCGGATATGTACCGGATATGTCACCGCACACGGTTGCCG
CTCAGCCTCCTGTTGCAGCCACTCCAATCCCGCAGGTCACCGTTGAAAACCACGACGATAAAGCATGGCGCGACACCCTG
CTAAAGGTGGCCGCCATTCTCTGTGAGCGCCAGCCGGAGTCACCGCAGGGTTACCGACTGCGCCGCCATGCGCTGTGGCA
AACCATCACCAGTACCCCGCAGGCAGAAAGCGATGGCCGGACCCCACTGGCAGCCTTCCCTGTCGATATGATGGATGATT
ACCTGGCGCGGCTGAACAATGCCGACATGGCGCTGTGGCAGCAGGTGGAAAAAAGCCTGCTGCTGGCCCCGTACTGGCTG
GACGGTCATTACCTCTCAGCACAGACCGCGCTGCGCCTCGGTTATAAACAGGTGGCGGATGCTATCCGTGATGAAGTTAC
CGATTTTCTGGCCCGCCTGCCCGCACTGATCAACCTGTTGTTTAACGACCGCACTCCGTTTGTGTCCGAACAGACGAAAC
AGTGGCTGGCATCATCCGGCTCAGTCAACCAGACCGTCCCGGTTGTACAGACCGATGAAGAATTACAGGCGGCCAAGGCG
TGCTTCGATGAAAACGGGCTGGAAGCCGCGCTGCGGTACCTGGAAAACCTGCCCGAAGGTGATCCCCGCCACCAGTTTCA
CCGCCAGTTTTTCGGCGCGCAGTTACTGGAAGAGGCCGGTATGGTTCAGCTTGCACAACAGCAGTACCGGATGCTCTTCA
GAACAGGATTACACATGATGCTATCCGAATGGGAGCCTTCCCTGCTGAAAGCACTGGAACAAAAACTCACGGCAGAACAG
TAA