Detailed information of component protein


Summary

Component ID T6CP010972
Component protein type TssM
T6SS ID (Type) T6SS00787 experimental (Type i1)
Strain Escherichia coli RS218
Replicon chromosome
Sequence Protein sequence (160 a.a.); Nucleotide sequence (480 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5386..5865 (-)
NCBI ID 356875272
GenBank JN837480
Uniprot ID G8IRL2_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Inside1-23VFKFPTSRLFSTLKSALRPAMPR
Transmembrane helix24-46FKVSATWLLTLAWIFLLVWIWWQ
Outside47-60GPKWTLYEQHWLAP
Transmembrane helix61-83LANRWLATAVWGLIALVWLTWRV
Inside84-159MKRLQKLEKQQKQQREEEKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSWQKHAAARGLSV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9925--


  Protein sequence: 160 a.a.    

>T6CP010972 JN837480:c5865-5386 [Escherichia coli RS218] [TssM]
VFKFPTSRLFSTLKSALRPAMPRFKVSATWLLTLAWIFLLVWIWWQGPKWTLYEQHWLAPLANRWLATAVWGLIALVWLT
WRVMKRLQKLEKQQKQQREEEKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSWQKHAAARGLSV*

  Nucleotide sequence: 480 bp    

>T6CP010972 JN837480:c5865-5386 [Escherichia coli RS218] [TssM]
GTGTTCAAATTTCCCACATCCCGACTGTTCAGCACGTTGAAATCTGCGCTCAGGCCAGCGATGCCGCGGTTTAAAGTTTC
CGCCACCTGGCTACTGACGCTGGCATGGATTTTTCTGCTGGTGTGGATCTGGTGGCAGGGTCCAAAATGGACGCTCTATG
AGCAGCACTGGCTGGCTCCGCTGGCAAACCGCTGGCTGGCGACCGCCGTCTGGGGACTTATCGCTCTGGTCTGGCTCACC
TGGCGGGTGATGAAGCGTCTGCAAAAGCTGGAAAAACAGCAGAAACAGCAGCGGGAGGAAGAAAAAGATCCGTTGACCGT
GGAACTCCACCGCCAGCAGCAATATCTGGATCACTGGCTGCTGCGCCTGCGCCGCCATCTGGATAACCGCCGTTATCTGT
GGCAGTTGCCGTGGTATATGGTCATTGGTCCTGCGGGTAGCTGGCAAAAGCACGCTGCTGCGCGAGGGCTTTCCGTCTGA