Detailed information of component protein


Summary

Component ID T6CP010971
Component protein type TssM
T6SS ID (Type) T6SS00787 experimental (Type i1)
Strain Escherichia coli RS218
Replicon chromosome
Sequence Protein sequence (1006 a.a.); Nucleotide sequence (3018 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 2337..5354 (-)
NCBI ID 356875270
GenBank JN837480
Uniprot ID G8IRL1_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 1.7e-66 338..649
IcmF-related_N PF14331.8 8.4e-59 41..285
IcmF_C PF06744.14 6.3e-20 879..983
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1005 VEYHPLITPRVGNQAVIFDVDGVLTTPGGDDLLRRRLREHWLGWLMQTRARQPLNGLILTLDLPDLLTADKSRRETLVQNLRQQLQEIRQSLHCRLPVYVVLTRLDLLNGFAALFHSLDKKDRDAILGVTFTRRAHESDGWRSELGAFWQTWVQQVNLALSDLVLAQTGAAPRSAVFSFSRQMQGTGEIVTALLAALLDGENMDVMLRGVWLTSSLQRGQVDDIFTQSAARQYGLGNSSLATWPLVETTPYFTRRLFPEVLLAEPNLAGENSVWLNSSRRRLTAFSTCGAALAALMVGSWHHYYNQNWQSGVNVLAQAKAFMDVPPPQGTDEFGNLQLPLLNPVRDATLAYGDYRDHGFLADMGLYQGARVGPYVEQTYIQLLEQRYLPSLMNGLIRDLNIAPPESEEKLAVLRVVRMMEDKSGRNNEAVKQYMARRWSNEFHGQRDIQAQLMVHLDYALEHTDWHAQRQSSDSDAVSRWTPYDKPIINAQQELSKLPIYQRVYQTLRTKALSVLPADLNLRDQVGPTFDNVFVAGNDEKLVIPQFLTRYGLQSYFVKQREGLVELTALDSWVLNLTQSVAYSEADREEIQRHITEQYISDYTATWRAGMDNLNVRDYEAMSALTDALEQIISGDQPFQRALTALRDNTHALTLSGKLDDKAREAAINEMDYRLLSRLGHEFAPENSALEEQKDKASTLQAVYQQLTELHRYLLAIQNSPVPGKSALKAVQLRLDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVRYMEVDWRDNVVKPFNEQLADNYPFNPRATQDASLDSFERFFKPDGILDNFYKNNLRLFLENDLTFGDDGRVLIREDIRQQLDTAQKIRDIFFSQQNGLGAQFAVETVSLSGNKRRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGRAPRSIAFSGPWAQFRLFGAGQLTNVTSDTFNVRFNVDGGAMVYQVHVDTEDNPFTGGLFSLFRLPDTLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9961 - -


  Protein sequence: 1006 a.a.    

>T6CP010971 JN837480:c5354-2337 [Escherichia coli RS218] [TssM]
VEYHPLITPRVGNQAVIFDVDGVLTTPGGDDLLRRRLREHWLGWLMQTRARQPLNGLILTLDLPDLLTADKSRRETLVQN
LRQQLQEIRQSLHCRLPVYVVLTRLDLLNGFAALFHSLDKKDRDAILGVTFTRRAHESDGWRSELGAFWQTWVQQVNLAL
SDLVLAQTGAAPRSAVFSFSRQMQGTGEIVTALLAALLDGENMDVMLRGVWLTSSLQRGQVDDIFTQSAARQYGLGNSSL
ATWPLVETTPYFTRRLFPEVLLAEPNLAGENSVWLNSSRRRLTAFSTCGAALAALMVGSWHHYYNQNWQSGVNVLAQAKA
FMDVPPPQGTDEFGNLQLPLLNPVRDATLAYGDYRDHGFLADMGLYQGARVGPYVEQTYIQLLEQRYLPSLMNGLIRDLN
IAPPESEEKLAVLRVVRMMEDKSGRNNEAVKQYMARRWSNEFHGQRDIQAQLMVHLDYALEHTDWHAQRQSSDSDAVSRW
TPYDKPIINAQQELSKLPIYQRVYQTLRTKALSVLPADLNLRDQVGPTFDNVFVAGNDEKLVIPQFLTRYGLQSYFVKQR
EGLVELTALDSWVLNLTQSVAYSEADREEIQRHITEQYISDYTATWRAGMDNLNVRDYEAMSALTDALEQIISGDQPFQR
ALTALRDNTHALTLSGKLDDKAREAAINEMDYRLLSRLGHEFAPENSALEEQKDKASTLQAVYQQLTELHRYLLAIQNSP
VPGKSALKAVQLRLDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVRYMEVDWRDNVVKPFNEQLADNYP
FNPRATQDASLDSFERFFKPDGILDNFYKNNLRLFLENDLTFGDDGRVLIREDIRQQLDTAQKIRDIFFSQQNGLGAQFA
VETVSLSGNKRRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGRAPRSIAFSGPWAQFRLFGAGQLTN
VTSDTFNVRFNVDGGAMVYQVHVDTEDNPFTGGLFSLFRLPDTLY*

  Nucleotide sequence: 3018 bp    

>T6CP010971 JN837480:c5354-2337 [Escherichia coli RS218] [TssM]
GTGGAATACCACCCGCTGATCACACCGCGAGTGGGCAACCAGGCGGTAATTTTCGATGTTGACGGCGTACTGACCACTCC
CGGCGGGGATGATCTGCTCCGCCGCCGCCTGCGCGAACACTGGCTGGGCTGGCTGATGCAAACGCGCGCTCGCCAGCCGC
TCAACGGTCTTATCCTGACGCTCGATCTTCCCGATCTGCTGACGGCGGATAAATCCCGCCGTGAGACACTGGTACAAAAT
TTGCGCCAGCAACTTCAGGAGATCCGTCAGAGCCTGCACTGCCGTCTGCCCGTTTACGTGGTGCTGACACGGCTGGATCT
GCTGAACGGCTTTGCCGCGCTGTTCCATTCACTGGATAAAAAAGACCGCGATGCGATCCTCGGCGTCACATTTACCCGCC
GCGCCCATGAAAGTGACGGCTGGCGCAGCGAACTGGGGGCTTTCTGGCAGACGTGGGTACAACAGGTGAACCTGGCGCTG
TCGGATCTGGTGCTCGCACAAACCGGTGCTGCTCCCCGCAGCGCTGTGTTCAGCTTCTCCCGTCAGATGCAGGGAACAGG
AGAAATCGTCACCGCACTGCTCGCCGCATTGCTGGACGGTGAGAACATGGATGTAATGCTGCGTGGCGTCTGGCTCACAT
CCTCGCTACAGCGTGGCCAGGTGGATGATATTTTCACGCAGTCCGCCGCCCGCCAGTACGGACTGGGTAACAGCTCGCTG
GCAACCTGGCCTCTGGTGGAGACGACGCCGTATTTTACTCGCCGCCTCTTCCCGGAAGTCCTGCTGGCTGAGCCGAACCT
GGCGGGTGAAAACAGCGTCTGGCTGAACAGCTCCCGGCGCAGGCTGACCGCCTTTTCCACCTGTGGCGCGGCACTGGCGG
CATTGATGGTCGGAAGCTGGCACCATTATTACAATCAGAACTGGCAGTCTGGCGTTAACGTACTGGCACAAGCTAAAGCC
TTTATGGACGTACCACCACCGCAGGGAACGGATGAATTCGGCAATCTGCAATTGCCATTGCTTAACCCGGTACGCGATGC
CACCCTGGCCTATGGTGATTATCGCGATCACGGTTTTCTGGCGGATATGGGATTGTACCAGGGCGCCCGCGTAGGGCCGT
ATGTGGAGCAAACCTACATTCAGCTTCTTGAGCAGCGTTATCTCCCCTCGTTAATGAACGGCCTGATCCGGGATCTAAAC
ATTGCCCCGCCAGAGAGCGAAGAAAAGCTCGCTGTGCTGCGCGTAGTGCGCATGATGGAAGACAAAAGTGGGCGCAACAA
CGAGGCGGTAAAACAGTACATGGCACGGCGCTGGAGCAATGAATTTCACGGCCAGCGCGATATTCAGGCGCAACTGATGG
TGCATCTGGACTATGCGCTGGAGCACACCGACTGGCACGCGCAGCGCCAAAGCAGCGACAGCGATGCTGTCAGCCGCTGG
ACCCCCTATGATAAACCGATCATTAATGCGCAGCAGGAACTGAGCAAGCTGCCCATATACCAGCGTGTCTACCAGACCCT
GCGCACCAAAGCATTAAGCGTGTTGCCCGCCGATTTGAATTTGCGCGACCAGGTTGGTCCCACCTTCGACAACGTGTTCG
TCGCCGGTAATGATGAAAAACTGGTGATCCCGCAGTTCCTCACCCGCTATGGACTGCAAAGCTATTTTGTCAAACAGCGT
GAGGGCCTCGTTGAGCTGACCGCGCTGGATTCGTGGGTACTGAACCTGACGCAAAGCGTCGCCTACAGCGAGGCCGACCG
TGAAGAGATCCAGCGCCATATCACCGAACAGTACATCAGTGACTATACCGCCACCTGGCGTGCCGGAATGGATAACCTCA
ACGTCCGTGACTATGAGGCCATGTCGGCGCTGACCGACGCGCTGGAGCAGATTATCAGCGGCGATCAGCCATTCCAGCGT
GCGCTGACGGCGCTGCGCGATAATACCCACGCGCTGACGCTCTCCGGCAAACTGGATGATAAGGCGAGGGAAGCGGCGAT
AAATGAGATGGATTACCGCCTGTTATCCCGGCTGGGGCATGAGTTCGCACCGGAAAACAGCGCACTGGAGGAGCAAAAGG
ACAAGGCGAGTACGCTACAGGCCGTGTACCAGCAACTGACCGAGCTGCACCGTTACCTGCTGGCGATCCAGAACTCGCCA
GTGCCGGGGAAATCGGCGCTGAAAGCAGTACAGCTACGGCTGGATCAAAACAGCAGCGATCCAATCTTCGCCACCCGTCA
GATGGCAAAAACCCTGCCTGCGCCTCTTAACCGCTGGGTAGGTAAGCTCGCGGATCAGGCCTGGCATGTGGTGATGGTGG
AAGCCGTTCGTTACATGGAAGTGGACTGGCGCGACAATGTAGTGAAACCCTTCAACGAGCAGCTTGCCGATAACTATCCG
TTTAATCCGCGCGCCACACAGGATGCCTCACTGGATTCGTTTGAACGTTTCTTTAAACCGGATGGCATTCTGGACAATTT
CTACAAGAACAACCTGCGCCTGTTCCTTGAAAACGATCTGACCTTTGGCGACGACGGCAGAGTGTTAATCCGTGAAGATA
TCCGGCAGCAACTGGATACCGCGCAGAAAATCCGCGACATCTTCTTCAGCCAGCAGAACGGGCTGGGCGCACAGTTTGCC
GTGGAAACCGTATCGCTTTCCGGCAATAAGCGGCGCAGCGTACTTAACCTGGACGGCCAGTTAGTGGACTACAGCCAGGG
ACGCAACTACACCGCCCATCTGGTCTGGCCGAACAACATGCGTGAAGGCAATGAAAGCAAGCTGACGCTGATTGGCACCA
GCGGCAGAGCACCGCGCAGTATCGCGTTCAGTGGACCGTGGGCGCAGTTCCGCCTGTTCGGCGCGGGCCAGTTGACCAAT
GTGACCAGTGACACCTTTAACGTGCGCTTTAACGTGGACGGCGGCGCAATGGTTTACCAGGTGCATGTGGATACCGAAGA
TAACCCGTTCACCGGCGGTCTGTTCAGCCTGTTCCGTTTACCGGATACGTTGTATTAA