Detailed information of component protein
Summary
| Component ID | T6CP010968 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS00789  (Type i3) |
| Strain | Salmonella enterica GIFU10007 |
| Replicon | chromosome |
| Sequence | Protein sequence (211 a.a.); Nucleotide sequence (633 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 37794..38426 (+) |
| NCBI ID | AEC05343.1 |
| GenBank | JF766712 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-210 | MADIRGITLSNSAALHLQVRDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLAPDFSRLRQLLALLPDVVQTTTPEIPPSPAPAPAPAGTVMDNAIPARAEDVPPVNAPPGISIPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPLLRQAERLVGKRFSEVINEIPVELLEKWDALE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9728 | - | - |
Protein sequence: 211 a.a.
>T6CP010968 JF766712:37794-38426 [Salmonella enterica] [TssA]
MADIRGITLSNSAALHLQVRDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLA
PDFSRLRQLLALLPDVVQTTTPEIPPSPAPAPAPAGTVMDNAIPARAEDVPPVNAPPGISIPHNAEPGPIRDRNDALERL
RCIRRWFESSEPSSPTIPLLRQAERLVGKRFSEVINEIPVELLEKWDALE*
MADIRGITLSNSAALHLQVRDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLA
PDFSRLRQLLALLPDVVQTTTPEIPPSPAPAPAPAGTVMDNAIPARAEDVPPVNAPPGISIPHNAEPGPIRDRNDALERL
RCIRRWFESSEPSSPTIPLLRQAERLVGKRFSEVINEIPVELLEKWDALE*
Nucleotide sequence: 633 bp
>T6CP010968 JF766712:37794-38426 [Salmonella enterica] [TssA]
ATGGCAGACATTCGCGGTATCACGCTGTCAAACAGTGCCGCCCTGCACCTGCAGGTACGGGACGTGGAGCGCGCGTTATC
CGCCCCTCGCCCGGCTGATGCGCTGGCCCCCGAATCCGTCCGCCAGCAACTGGCAGACCTCGAAGCCCGTGGGGCATTAC
CGCTAGCGGCGTTTCGCGAAGCGCAGGAAAGCGCAGAACGCCTGCAAGTGTGGGCGCGTGAGACATTAGGCGATCTGGCT
CCAGATTTTTCACGCCTGCGGCAGTTGTTAGCGCTGCTGCCTGACGTGGTACAGACAACCACGCCGGAAATCCCTCCGTC
GCCAGCGCCAGCGCCAGCTCCCGCAGGCACGGTTATGGATAATGCCATTCCTGCACGGGCAGAGGATGTGCCGCCTGTCA
ACGCGCCACCCGGTATATCTATCCCACACAATGCTGAACCGGGGCCAATTCGCGATCGTAATGATGCGCTGGAACGCCTG
CGGTGCATTCGTCGCTGGTTTGAGAGCAGTGAACCCAGCAGCCCGACCATCCCACTATTACGTCAGGCTGAAAGACTGGT
GGGAAAACGGTTCTCGGAGGTGATCAATGAGATCCCGGTGGAGTTGCTGGAGAAGTGGGATGCCCTGGAGTGA
ATGGCAGACATTCGCGGTATCACGCTGTCAAACAGTGCCGCCCTGCACCTGCAGGTACGGGACGTGGAGCGCGCGTTATC
CGCCCCTCGCCCGGCTGATGCGCTGGCCCCCGAATCCGTCCGCCAGCAACTGGCAGACCTCGAAGCCCGTGGGGCATTAC
CGCTAGCGGCGTTTCGCGAAGCGCAGGAAAGCGCAGAACGCCTGCAAGTGTGGGCGCGTGAGACATTAGGCGATCTGGCT
CCAGATTTTTCACGCCTGCGGCAGTTGTTAGCGCTGCTGCCTGACGTGGTACAGACAACCACGCCGGAAATCCCTCCGTC
GCCAGCGCCAGCGCCAGCTCCCGCAGGCACGGTTATGGATAATGCCATTCCTGCACGGGCAGAGGATGTGCCGCCTGTCA
ACGCGCCACCCGGTATATCTATCCCACACAATGCTGAACCGGGGCCAATTCGCGATCGTAATGATGCGCTGGAACGCCTG
CGGTGCATTCGTCGCTGGTTTGAGAGCAGTGAACCCAGCAGCCCGACCATCCCACTATTACGTCAGGCTGAAAGACTGGT
GGGAAAACGGTTCTCGGAGGTGATCAATGAGATCCCGGTGGAGTTGCTGGAGAAGTGGGATGCCCTGGAGTGA