Detailed information of component protein


Summary

Component ID T6CP010966
Component protein type TssG
T6SS ID (Type) T6SS00789 experimental (Type i3)
Strain Salmonella enterica GIFU10007
Replicon chromosome
Sequence Protein sequence (332 a.a.); Nucleotide sequence (996 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 36366..37361 (+)
NCBI ID AEC05345.1
GenBank JF766712
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.9e-88 11..309
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-331 MTGALDQAQKAPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHDPTLVHFSNIFHYRWLTQFWQAWRSGQSAGGGLDKPEHDRFAFYIASISGQDLRESAESPLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9880 - -


  Protein sequence: 332 a.a.    

>T6CP010966 JF766712:36366-37361 [Salmonella enterica] [TssG]
MTGALDQAQKAPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWG
PNGPLPLHYTELALNRSESRHDPTLVHFSNIFHYRWLTQFWQAWRSGQSAGGGLDKPEHDRFAFYIASISGQDLRESAES
PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQY
KFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTG
MIFEPEHGLTH*

  Nucleotide sequence: 996 bp    

>T6CP010966 JF766712:36366-37361 [Salmonella enterica] [TssG]
ATGACCGGCGCTCTCGACCAGGCGCAGAAAGCCCCCTGGCGTTACGGATTCCTGAACCTGATGCGACGCGTGGATGCCCA
GCTCTGTGATACTCCGGCAGGCAGTATCTGGCAGCCTCGGATGGAAAAATTCCGTCTGGGACAGACGCCGACGATGACCT
TTGCACCACGGGAAATCGCCCAGGTCAGCTGGCAGGATGGACGCCTGCACCTGAGCCTGTACAGCCTCGGACTATGGGGG
CCAAACGGCCCGTTGCCGCTGCACTATACCGAGCTGGCGCTAAATCGCTCAGAGAGTCGTCACGATCCGACGCTGGTTCA
TTTTTCCAATATTTTTCACTACCGCTGGCTGACGCAGTTCTGGCAGGCATGGCGCAGCGGCCAGTCCGCTGGTGGCGGGC
TGGACAAACCGGAACACGACCGTTTTGCGTTTTATATCGCCAGTATCAGCGGGCAGGATCTACGGGAAAGCGCCGAAAGC
CCGCTGTCAGATCATGTTCGCCTGGCGGCCTCCGCCCATCTGGTACGCGAGTCGCGCAATCCTGACGGGCTGGCCGCCAC
GCTGGCGCACTATTTCAGCGTACCTTTTGCGGTGAAAGAGTTTGCCCTGCACTGGATAACGGTGGCGAACGATGAAATCA
CCCGTCTGGGCACGCCCGCGCAGTCTTCGGTGCTGGGCAACGGGGCGCTTATCGGCCAGGCCGTACCGGATATGCAGTAC
AAATTCCGGCTAATTATCGGCCCGCTCACGCTGGAGGATTACCTGCGTTTTCTGCCCGGCGGCAACAATCTGCCCGTGCT
GACAGAACTGGTGCGTACGTTCATCGGTTTTGAATATTGCTGGGAAATTGAGCTGCAGTTGAAGCCCCATGCCGCACCGC
CTGCGGTGATCGGCGGCGCGCAGCGGCTTGGCTGGACGGCCTGGGCAGGTAAAGCCATGCATGACCGTCCGGTGACCGGC
ATGATTTTTGAACCTGAACACGGCTTAACCCACTGA