SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP010961
Component protein type	TssD
T6SS ID (Type)	T6SS00789 (Type i3)
Strain	Salmonella enterica GIFU10007
Replicon	chromosome
Sequence	Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference	[1] Wang M, Luo Z, Du H, et al. Molecular characterization of a functional type VI secretion system in Salmonella enterica serovar Typhi. Curr Microbiol. 2011 Jul;63(1):22-31. doi: 10.1007/s00284-011-9935-z. Epub 2011 Apr 13. PMID: 21487806

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	25148..25633 (-)
NCBI ID	AEC05357.1
GenBank	JF766712
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	6.9e-38	6..136

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-161	MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9900	-	-

Protein sequence: 162 a.a.

						>T6CP010961 JF766712:c25633-25148 [Salmonella enterica] [TssD]
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*					

Nucleotide sequence: 486 bp

						>T6CP010961 JF766712:c25633-25148 [Salmonella enterica] [TssD]
ATGGCTTATGACATTTTTTTAAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CTAATCTGGATTTTGATCACTATATCGATCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACGATGGTGAAATCGCCTCCCGTGAAACGGTCGAGCTTTCTTTCAGCACTGTGAAAC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACTATCACCGCAGGTTACGACTTCAAGGCGAACAAAGAA
ATTTAA					