Detailed information of component protein
Summary
![experimental experimental](images/experimental.png)
External database links
Locus tag (Gene) | VEPGS_0616 |
Coordinate (Strand) | 17426..18919 (+) |
NCBI ID | 225382182 |
GenBank | FJ790777 |
Uniprot ID | C0LZQ6_VIBAL |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 3.4e-128 | 64..372 |
VipB_2 | PF18945.2 | 8.4e-43 | 381..492 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-497 | MTTEAEKQLDPTVNEQTTSFLDQAIGATKQTEASRAEELIKTLAEEAMKGTVTWNKNLTVTFREAINLLDRQISDQLSEVMHYPELQKLEGSWRGLNYLVMNSETSSTLKVRMMSMTKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDYEFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKVLARLPYGQATAPVEEFGFEEFEVDPVSGIAVNAEHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHFFMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEATANAAISARLPYMMATSRFAHYLKVMARVKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGAPGSYNAVAWLKPWLQMEELTTSLRLVAKIPQSGG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9919 | - | - |
Protein sequence: 498 a.a.
>T6CP010943 FJ790777:17426-18919 [Vibrio alginolyticus] [TssC]
MTTEAEKQLDPTVNEQTTSFLDQAIGATKQTEASRAEELIKTLAEEAMKGTVTWNKNLTVTFREAINLLDRQISDQLSEV
MHYPELQKLEGSWRGLNYLVMNSETSSTLKVRMMSMTKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDY
EFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKV
LARLPYGQATAPVEEFGFEEFEVDPVSGIAVNAEHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHF
FMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEATANAAISARLPYMMATSR
FAHYLKVMARVKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGAPGSYNAVAWLKPWLQME
ELTTSLRLVAKIPQSGG*
MTTEAEKQLDPTVNEQTTSFLDQAIGATKQTEASRAEELIKTLAEEAMKGTVTWNKNLTVTFREAINLLDRQISDQLSEV
MHYPELQKLEGSWRGLNYLVMNSETSSTLKVRMMSMTKKELHKDLSKAVEFDQSQIFKKVYESEFGSAGGEPYGALIGDY
EFTNHPEDIESLRLMSNVAASGFSPFLSAASPALFGFDEWTELSKPRDLDKVFESLEYAQWRSFRESADSRFVSLTMPKV
LARLPYGQATAPVEEFGFEEFEVDPVSGIAVNAEHNDYCWMNSSYVLGVKLTDAFSKYGFCTAIRGAEGGGRVDNLPTHF
FMSDDGDPDMKCPTEIGITDRREAELGKLGFLPLCHYKNTNYAVFFGAQTCQKPANHESPEATANAAISARLPYMMATSR
FAHYLKVMARVKIGSFMEAEDVESWLNRWILGYVNASEGGGQEIRAKYPLADARVQVKEIPGAPGSYNAVAWLKPWLQME
ELTTSLRLVAKIPQSGG*
Nucleotide sequence: 1494 bp
>T6CP010943 FJ790777:17426-18919 [Vibrio alginolyticus] [TssC]
ATGACGACTGAAGCTGAAAAACAGTTAGATCCAACAGTTAATGAACAGACAACTTCATTCTTAGATCAAGCTATTGGTGC
AACTAAGCAGACCGAAGCTTCTCGTGCTGAGGAGCTGATTAAAACGCTCGCTGAAGAAGCAATGAAAGGGACAGTTACTT
GGAACAAAAACCTAACAGTAACTTTTCGTGAAGCGATTAATTTGCTCGATAGGCAGATTTCTGATCAGTTGTCTGAAGTA
ATGCATTACCCAGAATTACAGAAACTCGAAGGTTCTTGGCGCGGCTTAAATTATCTAGTGATGAATTCAGAGACCAGCTC
TACTCTGAAAGTTCGCATGATGAGTATGACCAAGAAAGAGCTACATAAAGACTTGAGCAAAGCTGTTGAGTTTGATCAAA
GCCAGATCTTTAAAAAGGTTTACGAGTCTGAGTTTGGTAGTGCTGGTGGTGAACCGTATGGTGCATTGATTGGAGACTAT
GAGTTTACCAACCACCCAGAAGATATTGAGTCGTTACGCCTAATGTCAAATGTAGCGGCTTCTGGCTTCTCTCCATTCTT
GTCCGCGGCTTCACCAGCACTATTCGGCTTTGATGAGTGGACTGAGCTGTCAAAACCACGCGACCTAGATAAGGTATTTG
AATCACTAGAATACGCCCAATGGCGTTCGTTCCGCGAGAGTGCCGATTCGCGCTTCGTTAGTCTGACGATGCCAAAAGTC
CTTGCTCGTTTGCCATACGGACAAGCTACCGCTCCAGTCGAAGAGTTTGGGTTTGAAGAGTTCGAAGTAGATCCTGTTTC
AGGTATTGCTGTTAACGCTGAACATAACGACTACTGTTGGATGAACTCTTCGTATGTTCTTGGTGTTAAGTTAACTGACG
CATTTTCAAAATATGGATTTTGTACTGCCATCCGTGGTGCAGAAGGCGGCGGTCGAGTGGATAACTTGCCAACGCATTTC
TTCATGAGTGATGATGGCGACCCTGATATGAAGTGCCCAACAGAGATTGGTATTACCGACAGACGTGAGGCGGAGCTTGG
TAAGCTTGGTTTCTTACCGCTTTGTCACTACAAAAACACCAACTATGCAGTGTTCTTTGGTGCGCAAACCTGTCAAAAAC
CAGCGAACCATGAATCCCCTGAAGCAACGGCCAATGCGGCTATTTCTGCCCGCCTACCTTATATGATGGCAACATCTCGT
TTTGCGCATTATTTGAAAGTAATGGCTCGAGTTAAAATTGGTAGCTTTATGGAAGCAGAAGACGTTGAGTCTTGGCTGAA
CCGCTGGATCCTAGGTTACGTCAATGCTTCTGAAGGCGGTGGTCAAGAGATCAGAGCGAAATACCCTCTAGCAGACGCTC
GTGTTCAGGTTAAGGAAATTCCTGGCGCACCTGGTTCTTACAATGCCGTAGCATGGCTGAAACCTTGGTTGCAAATGGAA
GAACTGACGACATCTTTGCGACTTGTGGCCAAGATCCCTCAGTCAGGTGGATAA
ATGACGACTGAAGCTGAAAAACAGTTAGATCCAACAGTTAATGAACAGACAACTTCATTCTTAGATCAAGCTATTGGTGC
AACTAAGCAGACCGAAGCTTCTCGTGCTGAGGAGCTGATTAAAACGCTCGCTGAAGAAGCAATGAAAGGGACAGTTACTT
GGAACAAAAACCTAACAGTAACTTTTCGTGAAGCGATTAATTTGCTCGATAGGCAGATTTCTGATCAGTTGTCTGAAGTA
ATGCATTACCCAGAATTACAGAAACTCGAAGGTTCTTGGCGCGGCTTAAATTATCTAGTGATGAATTCAGAGACCAGCTC
TACTCTGAAAGTTCGCATGATGAGTATGACCAAGAAAGAGCTACATAAAGACTTGAGCAAAGCTGTTGAGTTTGATCAAA
GCCAGATCTTTAAAAAGGTTTACGAGTCTGAGTTTGGTAGTGCTGGTGGTGAACCGTATGGTGCATTGATTGGAGACTAT
GAGTTTACCAACCACCCAGAAGATATTGAGTCGTTACGCCTAATGTCAAATGTAGCGGCTTCTGGCTTCTCTCCATTCTT
GTCCGCGGCTTCACCAGCACTATTCGGCTTTGATGAGTGGACTGAGCTGTCAAAACCACGCGACCTAGATAAGGTATTTG
AATCACTAGAATACGCCCAATGGCGTTCGTTCCGCGAGAGTGCCGATTCGCGCTTCGTTAGTCTGACGATGCCAAAAGTC
CTTGCTCGTTTGCCATACGGACAAGCTACCGCTCCAGTCGAAGAGTTTGGGTTTGAAGAGTTCGAAGTAGATCCTGTTTC
AGGTATTGCTGTTAACGCTGAACATAACGACTACTGTTGGATGAACTCTTCGTATGTTCTTGGTGTTAAGTTAACTGACG
CATTTTCAAAATATGGATTTTGTACTGCCATCCGTGGTGCAGAAGGCGGCGGTCGAGTGGATAACTTGCCAACGCATTTC
TTCATGAGTGATGATGGCGACCCTGATATGAAGTGCCCAACAGAGATTGGTATTACCGACAGACGTGAGGCGGAGCTTGG
TAAGCTTGGTTTCTTACCGCTTTGTCACTACAAAAACACCAACTATGCAGTGTTCTTTGGTGCGCAAACCTGTCAAAAAC
CAGCGAACCATGAATCCCCTGAAGCAACGGCCAATGCGGCTATTTCTGCCCGCCTACCTTATATGATGGCAACATCTCGT
TTTGCGCATTATTTGAAAGTAATGGCTCGAGTTAAAATTGGTAGCTTTATGGAAGCAGAAGACGTTGAGTCTTGGCTGAA
CCGCTGGATCCTAGGTTACGTCAATGCTTCTGAAGGCGGTGGTCAAGAGATCAGAGCGAAATACCCTCTAGCAGACGCTC
GTGTTCAGGTTAAGGAAATTCCTGGCGCACCTGGTTCTTACAATGCCGTAGCATGGCTGAAACCTTGGTTGCAAATGGAA
GAACTGACGACATCTTTGCGACTTGTGGCCAAGATCCCTCAGTCAGGTGGATAA