Detailed information of component protein
Summary
External database links
Locus tag (Gene) | HMPREF1171_RS04720 |
Coordinate (Strand) | 1031546..1031977 (+) |
NCBI ID | WP_005299981.1 |
RefSeq | NZ_JH815591 |
Uniprot ID | A0A7Z3YFY5_9GAMM, A0A1E4WSZ6_9GAMM, A0A1E4VY46_9GAMM, A0A3S7DM05_9GAMM, K1JFM2_9GAMM, A0A2R7PZE7_9GAMM, Q0PZH1_AERHY, A0A0T6MNM8_9GAMM, A0A0T6V292_9GAMM |
KEGG ID | avo:AMS64_11315, aaj:BOQ57_09005 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 8.6e-19 | 34..122 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-143 | MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIREAIRQCIRRYEPRIIHVDVRSPDYQASPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9787 | - | - |
Protein sequence: 144 a.a.
>T6CP010914 NZ_JH815591:1031546-1031977 [Aeromonas dhakensis] [TssE]
MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIR
EAIRQCIRRYEPRIIHVDVRSPDYQASPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV*
MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIR
EAIRQCIRRYEPRIIHVDVRSPDYQASPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV*
Nucleotide sequence: 432 bp
>T6CP010914 NZ_JH815591:1031546-1031977 [Aeromonas dhakensis] [TssE]
ATGCCGCATCTCTCTTCCTGGGATAGAGGAAATGCGGCCAGCCTGTTTGATCGCATCCGGGGGGAGGGGCTTGGCTCCTC
CCCTCGTTCGGAAGTTGATGAACTGGTCGACTCTGTCAAACGGCAGCTCGACCAGATCCTCAACACCCGTCCCGGCAATT
GCCGCAGTGCACCCGATCTGGGGGTCATTGATCTCAATGACGCCACTCAGGGCAGTGCGGATATCAAAGGACGGATCCGG
GAAGCGATCCGGCAATGCATCCGCCGTTATGAACCGCGGATCATCCATGTGGATGTTCGTTCACCGGACTATCAGGCGAG
CCCGCTTGAGATGTCGTTTCAGGTGACGGCCCACGTGCGGCTGGAGCATATCGAGCAAGTTACCTCGTTCAACGTCCATA
TGGACAGTCACCGTCACTACCGCATGGTCTGA
ATGCCGCATCTCTCTTCCTGGGATAGAGGAAATGCGGCCAGCCTGTTTGATCGCATCCGGGGGGAGGGGCTTGGCTCCTC
CCCTCGTTCGGAAGTTGATGAACTGGTCGACTCTGTCAAACGGCAGCTCGACCAGATCCTCAACACCCGTCCCGGCAATT
GCCGCAGTGCACCCGATCTGGGGGTCATTGATCTCAATGACGCCACTCAGGGCAGTGCGGATATCAAAGGACGGATCCGG
GAAGCGATCCGGCAATGCATCCGCCGTTATGAACCGCGGATCATCCATGTGGATGTTCGTTCACCGGACTATCAGGCGAG
CCCGCTTGAGATGTCGTTTCAGGTGACGGCCCACGTGCGGCTGGAGCATATCGAGCAAGTTACCTCGTTCAACGTCCATA
TGGACAGTCACCGTCACTACCGCATGGTCTGA