Detailed information of component protein


Summary

Component ID T6CP010908
Component protein type TssL
T6SS ID (Type) T6SS00896 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium
Replicon chromosome
Sequence Protein sequence (435 a.a.); Nucleotide sequence (1305 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 16755..18059 (+)
NCBI ID 15130931
GenBank AJ320483
Uniprot ID H9L4F7_SALTM
KEGG ID seni:CY43_01410
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 3.2e-59 63..265
OmpA PF00691.22 5.3e-16 328..426
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-242 MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIVEDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPAKLDAALVEPYRNLLVREMHLYQTLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKLFQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRRDPVMPALSPDFQGAISGRLRRMRR
Transmembrane helix 243-265 VPVWLSAGIALLAMLTLFGLYSH
Inside 266-434 RMDVQTVTVQQHIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSRVVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9837 - -


  Protein sequence: 435 a.a.    

>T6CP010908 AJ320483:16755-18059 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssL]
MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIVEDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPA
KLDAALVEPYRNLLVREMHLYQTLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKL
FQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRRDPVMPALSPDFQGAISGRLRRM
RRVPVWLSAGIALLAMLTLFGLYSHRMDVQTVTVQQHIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSR
VVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAG
RVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE*

  Nucleotide sequence: 1305 bp    

>T6CP010908 AJ320483:16755-18059 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssL]
ATGACAGACAGTACCCTGACGCCGCCAGCGGCGGATATGATGTCCTTTTTGTCCACCACGCCGGAACATAAGGACAGTGA
ATATGAAACGCCGGTACACACCAGCCAGCGCACGGAACTCAATGTCATCGTTGAAGACGGTCCGGACAGCAAACTCCGGC
TGGCTGAAATCAGCGCGGCGGCTAACCCGTTGCTCGCCGCTGCCCGGCCTTTATTGTGCGCTCTCGCAGCCATGCCCGCT
AAACTGGATGCGGCCCTGGTAGAGCCTTACCGTAATCTGCTGGTACGCGAGATGCATCTGTACCAGACATTATGCGATCA
GGCGAACCTGCGGCGCGAGCACGTACTGGCGGTACGTTACTGCCTGTGTACGGCGCTTGATGAAGCCGCCAATAACACAA
CCTGGGGACGGCGCGGCGTCTGGGCCGGAAAAAGCCTGCTGGTAACATTTCATGGTGAAAGCGAAGGCGGGATAAAACTT
TTCCAGATCATCGGGCGTCTGGCGGCCAGCTTCCAGGAGCATGGCAACGTACTGGAGGTTATCTACCACCTGCTGGGGTT
GGGATTTGAAGGCCGCTACAGCGTGCAGCCAGACGGGCGTAAGCAACTGGACAATATTCGCCAGCAACTGCTGACACAGC
TTTCACAGCGTCGCGATCCGGTTATGCCCGCGCTCTCGCCTGACTTTCAGGGGGCGATAAGCGGACGACTGCGGCGGATG
CGCCGGGTGCCGGTCTGGCTGAGCGCCGGGATAGCCCTGTTGGCGATGCTGACGCTGTTTGGCCTTTACAGCCACCGGAT
GGATGTGCAGACCGTCACCGTACAACAGCATATTGATGCGATTGGTATAAAACTGCCGCCGCCGCCTGTGCCGGTTCATA
AGCTGCGGCTGAAAATCCTGCTGGCAAACGAAATCGCCCGTGGCCTGCTGACCGTGGACGAAGATGACCAGCACAGTAGG
GTGGTCTTCCGTGGCGACGCCATGTTTGTGCCGGGACAGAAAACGGTGAGTGACGCAATCCGGCCAGTGATTAACAAAGC
GGCGCGGGAAATCGCCCGCGTGGGCGGCGCAGTCACTGTAACGGGTCACACTGACAGCCAGCCCATTCATTCGGCTGAAT
TCCCATCCAACCTGGTACTGTCGGAAAAACGGGCGGCGGAAGTTGCGGCGTTGCTGACCTCCGGCGGCGTACCTGCCGGA
CGGGTACATATCGTCGGCAAGGGCGATACGGTGCCGGTGGCGGATAACGGCAGTAAAGCCGGGCGGGCGAAAAACCGTCG
GGTGGAAATTCTGGTAGTGGAGTGA