Detailed information of component protein


Summary

Component ID T6CP010905
Component protein type TssD
T6SS ID (Type) T6SS00896 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 14323..14808 (+)
NCBI ID 15130928
GenBank AJ320483
Uniprot ID H9L4J8_SALTM
KEGG ID seni:CY43_01395
PDB ID 5XEU

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2e-38 6..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9848 - -



  Protein sequence: 162 a.a.    

>T6CP010905 AJ320483:14323-14808 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*

  Nucleotide sequence: 486 bp    

>T6CP010905 AJ320483:14323-14808 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
ATGTCTTATGACATTTTTCTGAAAATTGACGGCATTGACGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGTCTCGGTTCCGGTAAGGTCTCCGTCA
CTAATCTTTCATTTGAACATTACATCGATCGCGCCAGCCCGAACCTGTTCAAATACTGCTCTTCCGGTAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTACACTTTCACAGATCTGATTATTGC
AATGGTATCGCCCAGCGGAAGCCAGGGAGGGGAAATTGCGTCTCGCGAATCAATTGAACTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGTGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA