SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP010905
Component protein type	TssD
T6SS ID (Type)	T6SS00896 (Type i3)
Strain	Salmonella enterica subsp. enterica serovar Typhimurium
Replicon	chromosome
Sequence	Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference	[1] Folkesson A, Löfdahl S, Normark S. The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells. Res Microbiol. 2002 Oct;153(8):537-45. PMID: 12437215

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	14323..14808 (+)
NCBI ID	15130928
GenBank	AJ320483
Uniprot ID	H9L4J8_SALTM
KEGG ID	seni:CY43_01395
PDB ID	5XEU

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	2e-38	6..136

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-161	MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9848	-	-

Protein sequence: 162 a.a.

						>T6CP010905 AJ320483:14323-14808 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*					

Nucleotide sequence: 486 bp

						>T6CP010905 AJ320483:14323-14808 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
ATGTCTTATGACATTTTTCTGAAAATTGACGGCATTGACGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGTCTCGGTTCCGGTAAGGTCTCCGTCA
CTAATCTTTCATTTGAACATTACATCGATCGCGCCAGCCCGAACCTGTTCAAATACTGCTCTTCCGGTAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTACACTTTCACAGATCTGATTATTGC
AATGGTATCGCCCAGCGGAAGCCAGGGAGGGGAAATTGCGTCTCGCGAATCAATTGAACTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGTGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA					