Detailed information of component protein
Summary
| Component ID | T6CP010904 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00896  (Type i3) |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium |
| Replicon | chromosome |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 12537..13022 (+) |
| NCBI ID | 15130926 |
| GenBank | AJ320483 |
| Uniprot ID | H9L4J2_SALTM |
| KEGG ID | seni:CY43_01380 |
| PDB ID | 5XHH |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 6.9e-38 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9900 | - | - |
Protein sequence: 162 a.a.
>T6CP010904 AJ320483:12537-13022 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*
Nucleotide sequence: 486 bp
>T6CP010904 AJ320483:12537-13022 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
ATGGCTTATGACATTTTTTTGAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CCAACCTGGATTTTGATCACTATATCGACCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACGATGGTGAAATCGCCTCCCGTGAAACGGTGGAGCTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA
ATGGCTTATGACATTTTTTTGAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CCAACCTGGATTTTGATCACTATATCGACCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACGATGGTGAAATCGCCTCCCGTGAAACGGTGGAGCTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA