Detailed information of component protein


Summary

Component ID T6CP010898
Component protein type TssG
T6SS ID (Type) T6SS00896 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium
Replicon chromosome
Sequence Protein sequence (292 a.a.); Nucleotide sequence (876 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1388..2263 (-)
NCBI ID 15130917
GenBank AJ320483
Uniprot ID Q93IT4_SALTM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-84 2..269
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-291 MEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHDPTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAESPLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9751 - -


  Protein sequence: 292 a.a.    

>T6CP010898 AJ320483:c2263-1388 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssG]
MEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHDPTLVHFSNIFHHRWLTQF
WQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAESPLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKE
FALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYC
WEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH*

  Nucleotide sequence: 876 bp    

>T6CP010898 AJ320483:c2263-1388 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssG]
ATGGAAAAATTCCGTCTGGGACAGACGCCGACGATGACCTTTGCGCCACGGGAAATCGCCCAGGTCAGCTGGCAGGATGG
ACGCCTGCACCTGAGCCTGTACAGCCTCGGACTATGGGGGCCAAACGGCCCGTTGCCGCTGCACTATACCGAGCTGGCAC
TGAACCGCTCAGAGAGTCGTCACGATCCGACGCTGGTTCATTTTTCCAATATTTTTCACCACCGCTGGCTGACGCAGTTC
TGGCAGGCATGGCGCAGCGCCCAGTCCGCTGGTGGCGGGCTGGACAAACCGGAACACGACCGTTTTGCGTTTTATATCGC
CAGTCTCAGCGGGCAGGATCTACGGGAAAGCGCCGAAAGCCCGCTGTCAGATCATGTTCGCCTGGCAGCCTCCGCCCATC
TGGTACGCGAATCGCGCAATCCTGACGGGCTGGCCGCCACGCTGGCGCACTATTTCAGCGTACCTTTTGCGGTGAAAGAA
TTCGCCCTGCACTGGATAACGGTGGCGAACGATGAAATCACCCGTCTGGGCACGCCCGCGCAGTCTTCGGTGCTGGGCAA
CGGGGCGCTTATCGGCCAGGCCGTACCGGATATGCAGTACAAATTCCGGCTAATTATCGGCCCGCTCACGCTGGAGGATT
ACCTGCGTTTTCTGCCCGGCGGCAACAATCTGCCCGTGCTGACAGAACTGGTGCGTACGTTCATCGGTTTTGAATATTGC
TGGGAAATTGAGCTGCAGTTGAAGCCTCATGCCGCACCGCCTGCGGTGATCGGCGGCGCGCAGCGGCTTGGCTGGACGGC
CTGGGCAGGTAAAGCCATGCATGACCGTCCGGTGACCGGCATGATTTTTGAACCTGAACACGGCTTAACCCACTGA