SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP010897
Component protein type	TssA
T6SS ID (Type)	T6SS00896 (Type i3)
Strain	Salmonella enterica subsp. enterica serovar Typhimurium
Replicon	chromosome
Sequence	Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Reference	[1] Folkesson A, Löfdahl S, Normark S. The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells. Res Microbiol. 2002 Oct;153(8):537-45. PMID: 12437215

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	322..1377 (-)
NCBI ID	15130916
GenBank	AJ320483
Uniprot ID	H9L4K7_SALTM
KEGG ID	seni:CY43_01335
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	8.3e-31	7..136

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-351	MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFVSTPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRIQQAGAQGLAEMLTQLAELSVIWSDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQVRDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLAPDFSRLRQLLALLPDVVQTTTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNAPPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPLLRQAERLVGKRFSEVINEIPVELLEKWDALE

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9751	-	-

Protein sequence: 352 a.a.

						>T6CP010897 AJ320483:c1377-322 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssA]
MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFVSTPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRI
QQAGAQGLAEMLTQLAELSVIWSDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQV
RDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLAPDFSRLRQLLALLPDVVQT
TTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNAPPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPL
LRQAERLVGKRFSEVINEIPVELLEKWDALE*					

Nucleotide sequence: 1056 bp

						>T6CP010897 AJ320483:c1377-322 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssA]
ATGGACATGTCCCTGACTAAACCGGTAAGCGCGGAACAACCCTGCGGCCCCGATCCGGAGTACGATCCGGAATACCTGCT
GCTGTTCAGCCGCGCCGCCCCCCAGGCGGAGGCGCAATATGGTGATTTTGTCAGTACGCCGGAAGCCGTGAACTGGCCGG
AAATTGAACGTGATGCGCGCCGTCTGCTCACGCGCAGTAAGGATATCCGGGTGTTGATCCTGCTGCTGCGCAGTCGCATC
CAGCAGGCTGGCGCACAGGGACTGGCGGAAATGCTCACACAACTGGCAGAACTGAGCGTAATCTGGTCTGATGCACTCCA
TCCACAGCTGCTTACCGGCGAAGGCGCATCCGCAGAATCTATTGAAGATGCGTCGCTGGCGCGCAGTAATGCCCTGGCGG
CGCTGCTGGATCACGAAGGCGTGATGGCGGACATTCGCGGTATTACGCTGTCAAACAGTGCCGCCCTGCGCCTACAGGTA
CGGGATGTGGAGCGCGCGTTATCCGCTCCCCGCCCGGCTGATGCGCTGGCCCCCGAATCCGTCCGCCAGCAACTGGCCGA
CCTCGAAGCCCGTGGGGCATTACCGCTGGCGGCGTTTCGCGAAGCGCAGGAAAGCGCAGAACGCCTGCAAGTGTGGGCGC
GTGAGACATTAGGCGATCTGGCTCCAGATTTTTCACGCCTGCGGCAGTTGTTAGCGCTGCTGCCTGACGTGGTACAGACA
ACCACACCGGAAATCCCTCCGTCGCCAGCGCCAGTGCCAGACCCCGCAGGCACGGTTATGGATAATGCCGTTCCGGCACG
GGCAGAGGATGTGCCGCCTGTCAACGCGCCACCCGGTATATCCCTCCCACACAATGCTGAACCGGGGCCAATTCGCGATC
GTAATGATGCGCTGGAACGCCTGCGGTGCATTCGTCGCTGGTTTGAGAGCAGTGAACCCAGTAGCCCGACCATCCCACTG
TTACGCCAGGCTGAAAGACTGGTGGGAAAACGGTTCTCGGAGGTGATCAATGAGATCCCGGTGGAGTTGCTGGAGAAGTG
GGATGCCCTGGAGTGA					