Detailed information of component protein


Summary

Component ID T6CP010093
Component protein type TssB
T6SS ID (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (167 a.a.); Nucleotide sequence (501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BB2000_RS03985
Coordinate (Strand) 938109..938609 (-)
NCBI ID WP_004247653.1
RefSeq NC_022000
Uniprot ID A0A1Z1SWU6_PROMI, B4ET61_PROMH
KEGG ID pmr:PMI0749, pvl:AOB99_06135
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.7e-57 8..159

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-166 MSKKNLGSVAPKERINIKYTPNTGGAQAEVELPLNMLIVGDMKGKTEETPIEDRKAISVNQNNFNSVMESAGINLNINVRNTLEESSDSELNVNLDVKSLQDFSPDSIARQVPELNKLLELREALVALKGPLGNVPAFRKRLQELLENQETREQLLKELDIAANQK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9572 - -



  Protein sequence: 167 a.a.    

>T6CP010093 NC_022000:c938609-938109 [Proteus mirabilis BB2000] [TssB]
MSKKNLGSVAPKERINIKYTPNTGGAQAEVELPLNMLIVGDMKGKTEETPIEDRKAISVNQNNFNSVMESAGINLNINVR
NTLEESSDSELNVNLDVKSLQDFSPDSIARQVPELNKLLELREALVALKGPLGNVPAFRKRLQELLENQETREQLLKELD
IAANQK*

  Nucleotide sequence: 501 bp    

>T6CP010093 NC_022000:c938609-938109 [Proteus mirabilis BB2000] [TssB]
ATGAGTAAGAAAAATCTCGGTAGTGTTGCCCCTAAAGAAAGGATTAATATTAAATATACGCCAAATACTGGCGGAGCTCA
GGCTGAAGTCGAACTTCCATTGAATATGTTGATTGTTGGGGATATGAAAGGTAAAACGGAAGAGACCCCCATTGAAGATC
GCAAAGCGATTTCAGTCAATCAAAACAACTTCAATTCTGTTATGGAAAGTGCTGGCATTAATTTAAATATTAATGTTCGC
AATACCTTAGAAGAAAGCAGTGATTCAGAGCTTAATGTTAACCTTGATGTGAAATCTTTACAGGATTTCTCTCCTGATAG
TATCGCTCGCCAAGTGCCCGAATTAAATAAACTTCTCGAATTGCGTGAAGCTTTAGTTGCATTAAAAGGTCCTCTAGGCA
ATGTCCCAGCTTTTAGAAAGCGTCTTCAAGAACTACTTGAAAATCAAGAAACTCGCGAACAGCTTCTAAAAGAGCTCGAT
ATTGCTGCTAATCAAAAATAA