Detailed information of component protein


Summary

Component ID T6CP010091
Component protein type TssE
T6SS ID (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (144 a.a.); Nucleotide sequence (432 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BB2000_RS03975
Coordinate (Strand) 936173..936604 (-)
NCBI ID WP_004244624.1
RefSeq NC_022000
Uniprot ID A0A1Z1SXL0_PROMI, A0A6I5JRX7_9GAMM, B4ET59_PROMH
KEGG ID pmr:PMI0747, pvl:AOB99_06125
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 4.4e-13 35..123

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-143 MASNYGWQANAGASLFERIRGKNLGFSHRSRTNTLIESIKQNLNYILNARPDGCQGTPPLGIPDLNDATQSTVDFKSHLEDSISSCIIAYEPRISKVVVKFLEEDADSLSLQFNINAFIDLENKQQLIEFNVYLDNNRRYQLK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9789 - -



  Protein sequence: 144 a.a.    

>T6CP010091 NC_022000:c936604-936173 [Proteus mirabilis BB2000] [TssE]
MASNYGWQANAGASLFERIRGKNLGFSHRSRTNTLIESIKQNLNYILNARPDGCQGTPPLGIPDLNDATQSTVDFKSHLE
DSISSCIIAYEPRISKVVVKFLEEDADSLSLQFNINAFIDLENKQQLIEFNVYLDNNRRYQLK*

  Nucleotide sequence: 432 bp    

>T6CP010091 NC_022000:c936604-936173 [Proteus mirabilis BB2000] [TssE]
ATGGCATCCAATTATGGCTGGCAGGCTAATGCTGGCGCCAGCTTATTTGAACGGATCCGAGGGAAAAACTTAGGTTTTTC
CCATCGTTCGCGAACAAATACACTCATTGAATCAATAAAACAAAATTTAAATTACATCTTAAATGCTAGACCTGATGGTT
GCCAAGGAACGCCACCCTTAGGGATCCCTGATTTAAATGATGCGACTCAATCTACGGTTGATTTTAAATCTCACCTAGAA
GATAGCATTAGTAGTTGCATTATTGCGTATGAACCACGGATCAGCAAAGTTGTAGTGAAATTTCTTGAAGAAGATGCAGA
TAGTTTATCTTTACAATTTAATATTAATGCTTTTATTGATTTAGAAAATAAGCAGCAACTTATTGAATTTAATGTGTATT
TAGATAATAACCGTAGATATCAGCTTAAATAG