Detailed information of component protein


Summary

Component ID T6CP010089
Component protein type TssG
T6SS ID (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (346 a.a.); Nucleotide sequence (1038 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BB2000_RS03965
Coordinate (Strand) 933389..934426 (-)
NCBI ID WP_004244621.1
RefSeq NC_022000
Uniprot ID A0A845THM8_9GAMM, B4ET57_PROMH, A0A1Z1T117_PROMI
KEGG ID pmr:PMI0745
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 3.4e-87 25..331

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-345 MASTNQPAHTEVIDRWLEQAGSSVTEYNFYQLVELLNKIIHQDVNSMEDDSGILRFKSYSNIAFPTRDVISIEKNNVEQYELEVAFLGLQGSQSPLPGYYLDEFAWEDAQQIEGISAFLDIFNHRLIALLYRIWRKYRYYICFENEGQDSFSQYMFSLVGLGNGANRGRIKINHSKMLAYAGLLASPSRSSDVISSLISHCFDLENVKVIGWETRRVPIPESQQNKLGTISHQSGQKSRPRMLLGENFSLGSHIYDCNGKCTIEISELSLERYMRFLPNGSDFAPLVAFVSYIFHEQLAWDLRLSIAEKQAEGFRLGHQQHNQLGWQSFLGQPAKKPDVTITVLE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9895 - -



  Protein sequence: 346 a.a.    

>T6CP010089 NC_022000:c934426-933389 [Proteus mirabilis BB2000] [TssG]
MASTNQPAHTEVIDRWLEQAGSSVTEYNFYQLVELLNKIIHQDVNSMEDDSGILRFKSYSNIAFPTRDVISIEKNNVEQY
ELEVAFLGLQGSQSPLPGYYLDEFAWEDAQQIEGISAFLDIFNHRLIALLYRIWRKYRYYICFENEGQDSFSQYMFSLVG
LGNGANRGRIKINHSKMLAYAGLLASPSRSSDVISSLISHCFDLENVKVIGWETRRVPIPESQQNKLGTISHQSGQKSRP
RMLLGENFSLGSHIYDCNGKCTIEISELSLERYMRFLPNGSDFAPLVAFVSYIFHEQLAWDLRLSIAEKQAEGFRLGHQQ
HNQLGWQSFLGQPAKKPDVTITVLE*

  Nucleotide sequence: 1038 bp    

>T6CP010089 NC_022000:c934426-933389 [Proteus mirabilis BB2000] [TssG]
ATGGCCAGCACAAATCAACCAGCACATACTGAAGTAATCGATCGTTGGCTGGAACAAGCTGGCTCATCGGTAACAGAGTA
TAATTTTTATCAACTCGTTGAATTGTTAAATAAAATAATTCATCAAGATGTCAACTCGATGGAGGATGACAGCGGTATTC
TTCGCTTTAAATCTTATTCAAATATTGCATTTCCGACGCGAGATGTCATTTCCATTGAAAAAAATAATGTCGAACAATAT
GAATTAGAAGTCGCTTTTTTGGGCTTACAAGGAAGTCAGTCCCCCCTACCAGGCTATTATCTGGATGAGTTTGCTTGGGA
AGATGCACAACAGATAGAAGGTATCTCCGCTTTTCTCGATATCTTCAATCATCGTCTGATAGCGTTACTTTATCGGATCT
GGCGCAAATATCGTTACTACATTTGCTTTGAAAATGAAGGTCAGGATTCATTTTCACAATATATGTTTTCTCTCGTTGGA
TTAGGTAATGGAGCTAATCGCGGTCGGATCAAAATCAACCATAGCAAAATGCTCGCTTATGCTGGTCTTTTGGCGAGTCC
AAGTCGCTCTTCTGATGTGATTAGTAGTCTTATATCTCACTGTTTCGACTTAGAAAATGTAAAAGTAATTGGTTGGGAGA
CACGCCGTGTTCCTATTCCTGAATCACAACAAAACAAGTTAGGTACGATTTCTCATCAATCCGGACAAAAATCTCGCCCA
CGAATGTTATTAGGGGAGAATTTTAGTCTGGGCTCACACATATATGATTGCAATGGAAAATGCACCATCGAAATCAGTGA
ATTAAGTTTAGAACGCTATATGCGTTTTTTACCTAACGGCAGTGATTTCGCACCATTAGTTGCCTTTGTTTCTTACATTT
TTCATGAGCAATTAGCTTGGGATTTACGTCTTAGCATTGCTGAAAAGCAAGCCGAAGGGTTCCGTTTGGGTCACCAACAA
CACAACCAATTAGGCTGGCAAAGCTTTTTAGGTCAACCCGCAAAGAAACCGGATGTCACCATTACGGTATTGGAATAA