Detailed information of component protein


Summary

Component ID T6CP010087
Component protein type TssK
T6SS ID (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (453 a.a.); Nucleotide sequence (1359 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BB2000_RS03950
Coordinate (Strand) 930203..931561 (-)
NCBI ID WP_004247647.1
RefSeq NC_022000
Uniprot ID B4ET54_PROMH
KEGG ID pmr:PMI0742
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2e-145 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-452 MSTKNRVIWREGLFIKPQHFQQQQRHQDYMTVSILNNFFSHFWGFSTLKLSDDLYALGRIGIKEASGVMPDGTIFSIPNQDLLPQPIDITNITDSDSSIIYLAFPLMNENVSEISTEHNGSRLLSRYSESTENIRDLHTENGDISAIHVAQLTPILKQGKHGLDAYVALPICRIRERNANGNLTLDNDYIPSLLNIRASTLLSQFLTELEGTLYERGKQIASRIGAPGQQGVADVAEFMMLQVLNRTYPLYSHYAQEPVIHPEKLFRDLLELCGELQTFTNTSRLPENIAKYQHAKLTESYIPLIASIREALSVVLTPRAIPIPLQVQEHGIRVATIHDKQLLQRAEFIIAVKSQMPQEQLRRQFPQQTKVTTINNIRSLVSVQIPGVPLSPLSAAPRQLPYHSGYNYFHFDQQGNEWKGIQQDGNIAFHVSGNFPDLDIQLWAIRDGALYD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -


  Protein sequence: 453 a.a.    

>T6CP010087 NC_022000:c931561-930203 [Proteus mirabilis BB2000] [TssK]
MSTKNRVIWREGLFIKPQHFQQQQRHQDYMTVSILNNFFSHFWGFSTLKLSDDLYALGRIGIKEASGVMPDGTIFSIPNQ
DLLPQPIDITNITDSDSSIIYLAFPLMNENVSEISTEHNGSRLLSRYSESTENIRDLHTENGDISAIHVAQLTPILKQGK
HGLDAYVALPICRIRERNANGNLTLDNDYIPSLLNIRASTLLSQFLTELEGTLYERGKQIASRIGAPGQQGVADVAEFMM
LQVLNRTYPLYSHYAQEPVIHPEKLFRDLLELCGELQTFTNTSRLPENIAKYQHAKLTESYIPLIASIREALSVVLTPRA
IPIPLQVQEHGIRVATIHDKQLLQRAEFIIAVKSQMPQEQLRRQFPQQTKVTTINNIRSLVSVQIPGVPLSPLSAAPRQL
PYHSGYNYFHFDQQGNEWKGIQQDGNIAFHVSGNFPDLDIQLWAIRDGALYD*

  Nucleotide sequence: 1359 bp    

>T6CP010087 NC_022000:c931561-930203 [Proteus mirabilis BB2000] [TssK]
ATGTCAACTAAAAATAGAGTGATCTGGCGTGAAGGGCTATTTATCAAACCTCAACATTTTCAGCAACAACAACGTCATCA
AGATTATATGACGGTGAGTATTTTAAATAACTTTTTTTCACACTTTTGGGGATTTAGTACCTTAAAATTGAGTGACGATT
TATATGCTTTAGGTCGTATTGGTATTAAAGAAGCTTCTGGTGTTATGCCAGACGGCACCATTTTCTCTATACCAAACCAA
GATTTACTACCACAGCCTATTGATATAACGAATATTACTGATAGTGACAGCAGTATTATTTATCTGGCTTTTCCTTTAAT
GAACGAGAATGTCAGTGAAATTTCCACTGAACATAACGGTAGTCGTTTACTTTCTCGCTACAGCGAAAGCACCGAAAATA
TTCGTGATTTACATACTGAAAATGGTGATATCAGTGCTATTCATGTTGCACAGCTCACACCAATACTCAAACAAGGTAAA
CATGGTTTAGATGCCTATGTTGCTTTACCTATCTGTCGTATTAGAGAGCGTAATGCTAATGGTAATTTAACGCTAGATAA
TGATTATATTCCCAGCCTATTAAATATCCGTGCCTCAACATTATTGAGCCAATTTCTCACCGAGCTTGAAGGAACGCTAT
ATGAAAGAGGAAAACAAATTGCCTCTCGCATTGGTGCCCCGGGTCAGCAAGGTGTTGCGGATGTGGCAGAATTTATGATG
TTACAAGTGCTTAATCGCACTTATCCACTCTATTCGCATTATGCTCAAGAGCCGGTGATCCATCCTGAAAAACTATTTCG
AGATTTATTAGAGCTTTGTGGTGAACTACAAACATTCACGAATACTTCACGTTTACCTGAAAATATTGCCAAATATCAAC
ATGCTAAATTAACAGAAAGTTATATTCCATTAATAGCCAGTATCCGCGAAGCACTCAGTGTTGTCTTAACACCAAGAGCG
ATCCCAATCCCGCTACAAGTTCAAGAGCATGGTATTCGTGTAGCAACCATTCATGACAAACAACTGCTACAACGTGCTGA
ATTTATTATTGCGGTGAAATCACAAATGCCGCAAGAGCAACTACGTCGCCAATTCCCACAACAAACTAAGGTGACAACAA
TCAATAACATTCGCAGCTTGGTTAGTGTGCAAATACCGGGTGTTCCTTTATCACCACTTTCGGCTGCACCAAGACAATTA
CCTTATCACTCGGGATATAACTATTTCCATTTTGATCAACAAGGCAATGAATGGAAAGGGATCCAGCAGGATGGCAACAT
CGCATTCCACGTTTCAGGAAACTTCCCCGATCTCGATATTCAGTTATGGGCAATAAGAGATGGAGCACTCTATGACTGA