Detailed information of component protein


Summary

Component ID T6CP010085
Component protein type TssH
T6SS ID (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (904 a.a.); Nucleotide sequence (2712 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BB2000_RS03940
Coordinate (Strand) 926735..929446 (-)
NCBI ID WP_020945429.1
RefSeq NC_022000
Uniprot ID UPI00038432B8
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4e-37 641..802
AAA_lid_9 PF17871.3 5e-29 360..451
ClpB_D2-small PF10431.11 2.7e-09 809..882
AAA PF00004.31 3.8e-09 221..332
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-903 MIQIDLSTLVNRLHPIAKHALESAAAYCVSHQQPEITIAQFLQKLIETPLTDIRMISQKSALDINALSELLDIDIPPHQVITQSYPSFSPLLVEWMKDSWLLASTELNHSELRSGALFLTLLQMPLRYLAKPVADMLAQINRDQLKLNFDQWTEGSAESPFNEKTVSEKGNLAADSLLAKFTHNMTEQARNGELDPVLCRDNEIDLMIDILCRRRKNNPVVVGEPGVGKSALIEGLALRIIAGEIPDKLRGCELLTLDLGALQAGAAVKGEFEKRFKGIMQEVTQSPHPIILFIDEAHTLIGAGNQQGGLDVSNLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQLVQVKEPSSTEAIIIMRGLRSIYEKSHHVFIDDEALRASAELSERYISGRQLPDKAIDVLDTACARAAINLSSPPKALSSLKTELHQINMEMDVLQREHYLGLDDHSERLETLASQASAIEQQATDLQQAWEQQKELVSQIITLRATLLNNATEATNDDVANDVANNEVVSDIRTYSAAEDAEDNDEKIAAQPPCSSEELKQQLQQLDKQLAQLHDTHLLVSPHVDKKQIAAVIAEWTGVPLNRLSQDALSIVTELPTYLEESIKGQSLAIQCLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVIQIAQLMFGGTQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKRPYSVVLLDEVEKAHPDVLNLFYQAFDKGEIADGEGRVIDCKNIAFFLTSNLGDHVITAYADKPDELEDALYPELTTFFKPALLARMEVIPYLPLPAEVLRQIVDGKLARLINLLKQRFNAEINVEESVATEILRRASRAENGARILESIIDGALLPPLSLLLLQYSARNEAISHIRLATENDEFIAEVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9907 - -


  Protein sequence: 904 a.a.    

>T6CP010085 NC_022000:c929446-926735 [Proteus mirabilis BB2000] [TssH]
MIQIDLSTLVNRLHPIAKHALESAAAYCVSHQQPEITIAQFLQKLIETPLTDIRMISQKSALDINALSELLDIDIPPHQV
ITQSYPSFSPLLVEWMKDSWLLASTELNHSELRSGALFLTLLQMPLRYLAKPVADMLAQINRDQLKLNFDQWTEGSAESP
FNEKTVSEKGNLAADSLLAKFTHNMTEQARNGELDPVLCRDNEIDLMIDILCRRRKNNPVVVGEPGVGKSALIEGLALRI
IAGEIPDKLRGCELLTLDLGALQAGAAVKGEFEKRFKGIMQEVTQSPHPIILFIDEAHTLIGAGNQQGGLDVSNLLKPAL
ARGELRTIAATTWSEYKKYFEKDAALARRFQLVQVKEPSSTEAIIIMRGLRSIYEKSHHVFIDDEALRASAELSERYISG
RQLPDKAIDVLDTACARAAINLSSPPKALSSLKTELHQINMEMDVLQREHYLGLDDHSERLETLASQASAIEQQATDLQQ
AWEQQKELVSQIITLRATLLNNATEATNDDVANDVANNEVVSDIRTYSAAEDAEDNDEKIAAQPPCSSEELKQQLQQLDK
QLAQLHDTHLLVSPHVDKKQIAAVIAEWTGVPLNRLSQDALSIVTELPTYLEESIKGQSLAIQCLHKHLLTARADLRRPG
RPLGAFLLAGPSGVGKTETVIQIAQLMFGGTQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKRPYSVVL
LDEVEKAHPDVLNLFYQAFDKGEIADGEGRVIDCKNIAFFLTSNLGDHVITAYADKPDELEDALYPELTTFFKPALLARM
EVIPYLPLPAEVLRQIVDGKLARLINLLKQRFNAEINVEESVATEILRRASRAENGARILESIIDGALLPPLSLLLLQYS
ARNEAISHIRLATENDEFIAEVN*

  Nucleotide sequence: 2712 bp    

>T6CP010085 NC_022000:c929446-926735 [Proteus mirabilis BB2000] [TssH]
ATGATCCAAATTGATCTCTCTACTCTCGTTAATCGATTACACCCAATAGCTAAGCATGCCTTAGAAAGTGCAGCCGCTTA
CTGTGTAAGCCACCAGCAACCTGAAATTACGATTGCTCAGTTTCTACAAAAACTGATAGAAACGCCATTAACTGACATTC
GTATGATCAGTCAAAAAAGCGCATTAGATATTAATGCGTTATCAGAGTTATTAGATATCGACATTCCGCCACATCAAGTT
ATTACACAAAGTTATCCTAGTTTTTCACCCTTATTAGTTGAATGGATGAAAGATAGCTGGCTATTAGCGTCAACTGAACT
AAATCACAGTGAACTTCGCTCTGGTGCATTGTTTTTAACTTTACTACAAATGCCTTTGCGTTATCTTGCGAAACCTGTTG
CCGATATGCTTGCGCAGATTAACCGCGACCAATTAAAACTCAATTTTGATCAATGGACTGAAGGCTCTGCTGAATCGCCT
TTTAACGAAAAAACAGTATCAGAAAAAGGTAACCTTGCTGCTGATTCATTGTTAGCGAAATTTACTCATAACATGACTGA
ACAAGCGCGAAATGGTGAGTTAGATCCGGTCTTATGTCGCGATAATGAAATCGACTTAATGATTGATATTCTGTGCCGTC
GCCGTAAAAACAATCCTGTAGTAGTCGGAGAGCCCGGTGTGGGTAAAAGTGCGTTAATTGAAGGACTAGCACTACGTATT
ATTGCCGGAGAGATTCCTGATAAATTAAGAGGTTGTGAACTTCTTACTCTTGATTTAGGCGCATTACAGGCAGGTGCTGC
AGTCAAAGGCGAATTTGAAAAACGCTTTAAAGGCATTATGCAAGAAGTCACTCAATCTCCTCACCCTATCATTCTATTTA
TTGATGAAGCACACACCCTCATTGGTGCAGGTAACCAGCAAGGTGGCTTAGATGTTTCTAATTTATTAAAACCGGCTTTG
GCGCGTGGAGAACTACGAACTATCGCAGCAACGACTTGGAGCGAATACAAAAAATATTTTGAAAAAGATGCCGCGTTAGC
GCGCCGTTTCCAATTAGTGCAAGTCAAAGAGCCATCATCTACAGAAGCCATTATCATTATGCGTGGCTTACGTAGTATCT
ATGAAAAATCCCACCATGTCTTTATTGATGATGAAGCACTACGAGCCAGTGCTGAATTAAGTGAACGTTATATCTCTGGA
CGTCAATTACCAGACAAAGCCATTGATGTATTAGATACAGCCTGTGCAAGAGCCGCGATTAACCTATCTTCGCCACCAAA
GGCATTATCCTCTTTGAAAACAGAACTCCATCAAATCAATATGGAAATGGATGTATTACAAAGAGAACACTATTTAGGTT
TAGATGATCATTCTGAGCGTCTTGAAACGTTAGCCTCACAAGCAAGTGCTATTGAGCAACAAGCAACTGATTTACAGCAA
GCATGGGAGCAACAAAAAGAGCTTGTATCTCAAATTATTACCTTACGAGCAACATTACTTAATAATGCTACCGAAGCGAC
TAATGACGATGTCGCAAATGATGTTGCAAATAATGAAGTGGTAAGTGATATAAGAACTTATAGTGCAGCAGAAGATGCTG
AAGATAATGATGAAAAAATAGCAGCACAGCCCCCCTGCTCATCTGAAGAATTAAAGCAACAGTTACAACAATTAGATAAA
CAACTTGCTCAGTTACACGACACGCATTTACTGGTTTCGCCTCACGTCGATAAAAAACAAATTGCGGCGGTAATTGCTGA
ATGGACAGGCGTACCATTAAATCGATTATCACAAGATGCATTATCAATTGTCACTGAGTTACCGACCTACTTGGAAGAGA
GTATCAAAGGCCAATCATTAGCCATTCAATGTTTACACAAACATTTACTTACAGCGCGGGCTGATTTACGTCGACCGGGT
CGACCGCTGGGGGCGTTCTTATTAGCAGGTCCTAGTGGCGTGGGTAAAACAGAAACGGTTATCCAAATTGCCCAATTAAT
GTTCGGTGGCACACAATATCTCACGACTATTAATATGTCTGAGTTTCAAGAAAAACATACTGTTTCTCGCCTTATTGGTT
CACCTCCCGGTTATGTGGGATATGGTGAAGGAGGGATCTTAACAGAAGCTATTCGTAAAAGACCTTACTCAGTTGTTTTA
CTCGACGAAGTAGAGAAAGCGCATCCTGATGTGCTAAATCTATTTTATCAAGCTTTTGATAAAGGAGAGATAGCCGATGG
AGAAGGACGAGTCATTGATTGTAAAAATATCGCATTTTTCCTCACCTCTAATTTAGGTGACCATGTCATTACTGCTTACG
CGGATAAACCGGACGAACTAGAAGATGCACTCTACCCTGAATTAACAACTTTCTTTAAACCGGCATTACTTGCTCGAATG
GAAGTGATCCCTTATTTACCGTTGCCTGCAGAGGTTTTACGACAAATTGTTGATGGCAAATTAGCCCGTCTTATTAACCT
GTTAAAACAGCGTTTCAACGCAGAAATCAATGTAGAAGAGAGTGTTGCTACGGAAATTTTACGCAGAGCTTCTCGTGCTG
AAAATGGTGCGCGTATTTTGGAATCTATTATTGATGGTGCGTTATTGCCGCCTCTTTCTTTATTACTTCTACAATATAGT
GCACGTAATGAAGCTATCTCTCATATTCGCTTAGCGACTGAAAATGATGAGTTTATTGCGGAGGTTAATTAA