Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BB2000_RS03910 |
Coordinate (Strand) | 917149..918885 (-) |
NCBI ID | WP_020945425.1 |
RefSeq | NC_022000 |
Uniprot ID | UPI000384307D |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssF | PF05947.14 | 1.4e-42 | 6..561 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-578 | MSEIKYIKEKQYLQKLFSEYADKAPHLASVLDPQDPQTSYLLEGFAFLSARLQDKIDDAFPEITLPLLQRLNSQAIKGLPSTTIIQIDQSEILPYPMEINEKHLVIGDNGAQFSFCHNFTIMPYSILDRKITQHPNHSCISLEILYRGDVELTQTNALNVFLGENKTTSDILLLAFSQYFEKIEVVHNGERYEGDPLNYAFEPKIGNDYKIFPQKNNSFSAPQRLLEGLYLPHVHHFIELDIPQIVTQLDWKQQQRFVVNIYFSQQLPLTQEECNQSFFLNCAPAIDSEAKHTLLIDFKKNKSSYLLPIPTHHYLADLDKIELSLEPHELARGIYCHFYPTTELTAASRLMPQFHKAIFYSLTMEKNITGHTLYYLNFFDNKGDPMVTPPSLHFACVYIGFEQYKRNELGLLNKHSEKMPDAVKTGNITLLSSCYPPIVNNHHFWKLLSHYSANGSMLMSLDTIKHMISDYILYRDTDRQVTRKCERLLNGLVELKTHLYDYILKGKPYRCLSLSLFIDETQYENRGEAFVFTTHLYHFFPFCLSENMLLEMSVTLNDQKNTTWYLSPSPLRGYKSMI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9981 | - | - |
Protein sequence: 579 a.a.
>T6CP010081 NC_022000:c918885-917149 [Proteus mirabilis BB2000] [TssF]
MSEIKYIKEKQYLQKLFSEYADKAPHLASVLDPQDPQTSYLLEGFAFLSARLQDKIDDAFPEITLPLLQRLNSQAIKGLP
STTIIQIDQSEILPYPMEINEKHLVIGDNGAQFSFCHNFTIMPYSILDRKITQHPNHSCISLEILYRGDVELTQTNALNV
FLGENKTTSDILLLAFSQYFEKIEVVHNGERYEGDPLNYAFEPKIGNDYKIFPQKNNSFSAPQRLLEGLYLPHVHHFIEL
DIPQIVTQLDWKQQQRFVVNIYFSQQLPLTQEECNQSFFLNCAPAIDSEAKHTLLIDFKKNKSSYLLPIPTHHYLADLDK
IELSLEPHELARGIYCHFYPTTELTAASRLMPQFHKAIFYSLTMEKNITGHTLYYLNFFDNKGDPMVTPPSLHFACVYIG
FEQYKRNELGLLNKHSEKMPDAVKTGNITLLSSCYPPIVNNHHFWKLLSHYSANGSMLMSLDTIKHMISDYILYRDTDRQ
VTRKCERLLNGLVELKTHLYDYILKGKPYRCLSLSLFIDETQYENRGEAFVFTTHLYHFFPFCLSENMLLEMSVTLNDQK
NTTWYLSPSPLRGYKSMI*
MSEIKYIKEKQYLQKLFSEYADKAPHLASVLDPQDPQTSYLLEGFAFLSARLQDKIDDAFPEITLPLLQRLNSQAIKGLP
STTIIQIDQSEILPYPMEINEKHLVIGDNGAQFSFCHNFTIMPYSILDRKITQHPNHSCISLEILYRGDVELTQTNALNV
FLGENKTTSDILLLAFSQYFEKIEVVHNGERYEGDPLNYAFEPKIGNDYKIFPQKNNSFSAPQRLLEGLYLPHVHHFIEL
DIPQIVTQLDWKQQQRFVVNIYFSQQLPLTQEECNQSFFLNCAPAIDSEAKHTLLIDFKKNKSSYLLPIPTHHYLADLDK
IELSLEPHELARGIYCHFYPTTELTAASRLMPQFHKAIFYSLTMEKNITGHTLYYLNFFDNKGDPMVTPPSLHFACVYIG
FEQYKRNELGLLNKHSEKMPDAVKTGNITLLSSCYPPIVNNHHFWKLLSHYSANGSMLMSLDTIKHMISDYILYRDTDRQ
VTRKCERLLNGLVELKTHLYDYILKGKPYRCLSLSLFIDETQYENRGEAFVFTTHLYHFFPFCLSENMLLEMSVTLNDQK
NTTWYLSPSPLRGYKSMI*
Nucleotide sequence: 1737 bp
>T6CP010081 NC_022000:c918885-917149 [Proteus mirabilis BB2000] [TssF]
ATGAGTGAAATTAAATATATTAAAGAAAAGCAGTACTTACAAAAACTGTTCAGTGAGTATGCAGATAAAGCGCCACATTT
AGCGAGCGTACTTGATCCTCAAGATCCACAAACAAGTTATCTCTTAGAAGGCTTTGCTTTTTTATCTGCTCGTTTACAAG
ATAAAATTGATGATGCTTTTCCTGAGATCACATTACCCCTACTGCAACGACTAAATTCCCAAGCCATTAAAGGGCTACCA
TCAACAACAATTATCCAAATTGACCAAAGTGAAATTCTCCCCTATCCCATGGAGATTAATGAGAAACATTTGGTGATTGG
CGACAACGGGGCACAATTTAGTTTCTGCCATAATTTCACCATCATGCCTTATAGCATTTTGGATAGAAAAATTACTCAGC
ATCCAAACCACTCTTGTATCTCTCTTGAAATATTATATCGTGGTGATGTGGAATTAACTCAAACAAATGCACTTAATGTT
TTTTTAGGGGAAAATAAAACCACCTCAGACATTTTATTACTCGCATTTAGTCAATACTTTGAAAAAATTGAGGTGGTACA
TAACGGTGAACGTTATGAAGGCGATCCTCTTAATTATGCTTTTGAACCCAAAATTGGCAATGACTATAAAATCTTCCCAC
AGAAAAATAACTCATTTTCTGCGCCACAACGTTTATTAGAAGGTCTTTATTTACCCCATGTTCACCATTTTATTGAGTTA
GATATACCACAAATAGTGACTCAATTAGATTGGAAACAACAGCAGCGGTTTGTTGTTAATATCTATTTCAGTCAGCAACT
TCCTTTAACTCAAGAAGAGTGTAATCAGAGCTTTTTTTTAAACTGTGCTCCAGCGATTGATAGTGAAGCAAAACATACAC
TTTTAATTGATTTTAAAAAGAATAAATCAAGTTATTTACTCCCTATTCCAACCCATCACTATTTGGCCGATCTTGATAAA
ATTGAGTTATCACTAGAGCCTCATGAGCTAGCGCGTGGCATATACTGTCATTTTTATCCTACGACAGAATTAACCGCCGC
CTCTCGTTTAATGCCCCAATTTCATAAAGCCATTTTCTATTCATTAACAATGGAGAAAAATATTACTGGGCATACACTTT
ATTATTTGAATTTCTTTGATAATAAAGGTGATCCTATGGTCACACCGCCTAGTTTACATTTTGCATGTGTTTATATTGGC
TTTGAACAATATAAAAGAAATGAGTTAGGTCTATTAAATAAACACAGCGAAAAAATGCCTGATGCAGTAAAAACGGGAAA
TATCACATTATTATCATCTTGTTATCCACCTATTGTAAATAATCACCATTTTTGGAAATTGTTATCTCATTACAGTGCTA
ATGGTTCAATGTTAATGTCATTAGATACTATTAAACATATGATTTCTGATTATATTCTTTACCGAGATACTGATAGGCAG
GTCACTCGAAAATGTGAGCGATTATTAAATGGACTCGTTGAACTAAAAACACATTTATATGACTATATTTTAAAAGGTAA
ACCCTATCGTTGTTTATCTTTATCGCTATTCATTGACGAAACACAATATGAAAATAGAGGTGAAGCTTTTGTCTTTACTA
CACATCTTTACCATTTTTTCCCATTCTGTTTATCTGAAAATATGTTATTGGAAATGTCAGTTACACTCAATGATCAGAAA
AACACCACTTGGTATTTATCTCCCTCACCACTAAGGGGCTATAAATCAATGATTTAA
ATGAGTGAAATTAAATATATTAAAGAAAAGCAGTACTTACAAAAACTGTTCAGTGAGTATGCAGATAAAGCGCCACATTT
AGCGAGCGTACTTGATCCTCAAGATCCACAAACAAGTTATCTCTTAGAAGGCTTTGCTTTTTTATCTGCTCGTTTACAAG
ATAAAATTGATGATGCTTTTCCTGAGATCACATTACCCCTACTGCAACGACTAAATTCCCAAGCCATTAAAGGGCTACCA
TCAACAACAATTATCCAAATTGACCAAAGTGAAATTCTCCCCTATCCCATGGAGATTAATGAGAAACATTTGGTGATTGG
CGACAACGGGGCACAATTTAGTTTCTGCCATAATTTCACCATCATGCCTTATAGCATTTTGGATAGAAAAATTACTCAGC
ATCCAAACCACTCTTGTATCTCTCTTGAAATATTATATCGTGGTGATGTGGAATTAACTCAAACAAATGCACTTAATGTT
TTTTTAGGGGAAAATAAAACCACCTCAGACATTTTATTACTCGCATTTAGTCAATACTTTGAAAAAATTGAGGTGGTACA
TAACGGTGAACGTTATGAAGGCGATCCTCTTAATTATGCTTTTGAACCCAAAATTGGCAATGACTATAAAATCTTCCCAC
AGAAAAATAACTCATTTTCTGCGCCACAACGTTTATTAGAAGGTCTTTATTTACCCCATGTTCACCATTTTATTGAGTTA
GATATACCACAAATAGTGACTCAATTAGATTGGAAACAACAGCAGCGGTTTGTTGTTAATATCTATTTCAGTCAGCAACT
TCCTTTAACTCAAGAAGAGTGTAATCAGAGCTTTTTTTTAAACTGTGCTCCAGCGATTGATAGTGAAGCAAAACATACAC
TTTTAATTGATTTTAAAAAGAATAAATCAAGTTATTTACTCCCTATTCCAACCCATCACTATTTGGCCGATCTTGATAAA
ATTGAGTTATCACTAGAGCCTCATGAGCTAGCGCGTGGCATATACTGTCATTTTTATCCTACGACAGAATTAACCGCCGC
CTCTCGTTTAATGCCCCAATTTCATAAAGCCATTTTCTATTCATTAACAATGGAGAAAAATATTACTGGGCATACACTTT
ATTATTTGAATTTCTTTGATAATAAAGGTGATCCTATGGTCACACCGCCTAGTTTACATTTTGCATGTGTTTATATTGGC
TTTGAACAATATAAAAGAAATGAGTTAGGTCTATTAAATAAACACAGCGAAAAAATGCCTGATGCAGTAAAAACGGGAAA
TATCACATTATTATCATCTTGTTATCCACCTATTGTAAATAATCACCATTTTTGGAAATTGTTATCTCATTACAGTGCTA
ATGGTTCAATGTTAATGTCATTAGATACTATTAAACATATGATTTCTGATTATATTCTTTACCGAGATACTGATAGGCAG
GTCACTCGAAAATGTGAGCGATTATTAAATGGACTCGTTGAACTAAAAACACATTTATATGACTATATTTTAAAAGGTAA
ACCCTATCGTTGTTTATCTTTATCGCTATTCATTGACGAAACACAATATGAAAATAGAGGTGAAGCTTTTGTCTTTACTA
CACATCTTTACCATTTTTTCCCATTCTGTTTATCTGAAAATATGTTATTGGAAATGTCAGTTACACTCAATGATCAGAAA
AACACCACTTGGTATTTATCTCCCTCACCACTAAGGGGCTATAAATCAATGATTTAA