Detailed information of component protein


Summary

Component ID T6CP010080
Component protein type TssD
T6SS ID (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (158 a.a.); Nucleotide sequence (474 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BB2000_RS03905
Coordinate (Strand) 916585..917058 (-)
NCBI ID WP_004244607.1
RefSeq NC_022000
Uniprot ID A0A1Z1SXL7_PROMI, A0A6I5JSV1_9GAMM, B4ET45_PROMH
KEGG ID pvl:AOB99_06055, pmr:PMI0733
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.2e-25 18..143

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-157 MANSIYLKIIGKSQGDISKGCSTLGSIGNKYQHGHEDQIFVYSFDYDLTRAQNLNHSPVVISKPIDKSSPLLGVAITNNELLECELEFYRTSSNGNQEKFYTIKLTKASITNISAHYPNSLTHADAQPYEDITIRYESISWNHICAGTSGYSISKNI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9684 - -



  Protein sequence: 158 a.a.    

>T6CP010080 NC_022000:c917058-916585 [Proteus mirabilis BB2000] [TssD]
MANSIYLKIIGKSQGDISKGCSTLGSIGNKYQHGHEDQIFVYSFDYDLTRAQNLNHSPVVISKPIDKSSPLLGVAITNNE
LLECELEFYRTSSNGNQEKFYTIKLTKASITNISAHYPNSLTHADAQPYEDITIRYESISWNHICAGTSGYSISKNI*

  Nucleotide sequence: 474 bp    

>T6CP010080 NC_022000:c917058-916585 [Proteus mirabilis BB2000] [TssD]
ATGGCTAATTCAATATATTTAAAGATAATAGGGAAATCTCAAGGTGATATATCTAAAGGGTGCTCTACTTTAGGATCTAT
AGGCAATAAATATCAGCACGGACATGAAGATCAGATATTTGTGTATTCATTTGATTATGATTTAACTCGAGCACAAAATT
TAAATCATTCCCCTGTGGTAATTTCAAAACCTATAGATAAATCTTCACCCTTACTTGGGGTTGCAATAACAAATAATGAA
TTATTAGAGTGCGAGCTAGAATTCTATAGAACAAGTTCAAACGGCAATCAAGAAAAGTTTTATACCATTAAGCTAACAAA
AGCCAGCATTACCAATATATCAGCACATTACCCTAATTCACTGACGCATGCAGATGCCCAGCCTTATGAAGATATTACTA
TTCGATATGAAAGTATCTCTTGGAACCATATTTGTGCAGGAACATCAGGTTATAGTATCAGCAAAAATATTTAA