Detailed information of component protein


Summary

Component ID T6CP009654
Component protein type TssE
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (101 a.a.); Nucleotide sequence (303 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12150
Coordinate (Strand) 2519528..2519830 (-)
NCBI ID -
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.3e-07 4..66
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 101 a.a.    

>T6CP009654 NC_010067:c2519830-2519528 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssE]
LSHLPDYGLPDMTKILQGMPGTAHELIDTLAGVLLKYEPRLQSLNVTLLEQQVPGELRYAIDAELRGIGLVRYGTEFMPE
GKVLIRHLKQQQYLENHQYI*

  Nucleotide sequence: 303 bp    

>T6CP009654 NC_010067:c2519830-2519528 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssE]
CTATCCCATCTACCAGATTATGGTTTGCCGGATATGACCAAAATTCTGCAAGGAATGCCCGGGACAGCCCACGAACTGAT
CGATACGTTGGCCGGTGTCCTGCTCAAGTATGAACCCCGTTTGCAGTCACTCAATGTCACTTTACTTGAACAGCAAGTGC
CTGGTGAGCTACGTTACGCCATTGATGCGGAGCTGAGAGGTATCGGACTTGTACGGTATGGCACCGAGTTTATGCCTGAA
GGTAAAGTGCTGATCAGGCATTTGAAACAGCAGCAATATCTGGAAAACCATCAGTATATTTAA