Detailed information of component protein


Summary

Component ID T6CP009600
Component protein type TssA
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (421 a.a.); Nucleotide sequence (1263 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC0395_RS00085
Coordinate (Strand) 15377..16639 (-)
NCBI ID WP_000073077.1
RefSeq NC_009456
Uniprot ID A0A0X1L1P2_VIBCO, A0A0K9UV34_VIBCL, A0A023PRI8_VIBCL
KEGG ID vcq:EN18_04330
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-08 25..99
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 421 a.a.    

>T6CP009600 NC_009456:c16639-15377 [Vibrio cholerae O395] [TssA]
MSNVIFIDNVCYRLTNDSEEIRGLEPYAKVREEINRRFNPIAGGTDWAVVKEYCEQLACNQGMDFLICGYYAVACLKTQG
LAGYATGMELMSASLANQGECDVKSAKVRKEILDWVNARVVQELKALKPTYESLRDLYRAERHCERLHQLFEQQQTEYKV
DFEGVGFALFEHIDRIETQYHSLLKKQEKAQPPKLKFWQRGYALFTLGVLGVALGMVGGYWGWPWFYTTPYAAPQRITTL
NEASQTQALLNDSSTSERARWQHDLIPLYRDTLQQNLTISFSEPKRHAITQLNLLRTLYPENEQVNALSQEFALQQQQAL
EQTALFVAKFSEIRTKMANISLLAKRGKWAELEKQTKSLEEFAVSLSPIYGRVDYVQGLLEQGDVTNAQKEFAILKQRLD
SLSWKIAELEQRIGDAALLQ*

  Nucleotide sequence: 1263 bp    

>T6CP009600 NC_009456:c16639-15377 [Vibrio cholerae O395] [TssA]
ATGTCCAATGTGATTTTTATTGATAACGTTTGCTACCGATTAACCAATGATTCTGAGGAGATTCGCGGATTAGAGCCCTA
TGCGAAGGTTCGTGAGGAGATAAACCGCCGCTTCAATCCGATTGCTGGGGGCACGGATTGGGCAGTGGTAAAAGAGTACT
GTGAACAACTGGCCTGTAACCAAGGAATGGATTTTCTGATCTGCGGTTACTATGCGGTAGCCTGCCTGAAAACTCAGGGG
TTAGCGGGGTATGCCACCGGTATGGAGCTGATGAGTGCAAGCCTTGCCAACCAAGGTGAGTGTGATGTGAAAAGCGCCAA
AGTGCGCAAAGAGATCCTTGATTGGGTCAATGCACGTGTGGTGCAGGAACTGAAAGCACTTAAGCCAACTTATGAGTCGC
TGCGAGATCTGTATCGGGCTGAGCGCCATTGCGAGCGGTTACATCAGCTGTTTGAACAGCAACAAACCGAATACAAAGTA
GACTTTGAAGGGGTCGGGTTTGCTCTGTTTGAACACATAGACAGAATTGAAACCCAATACCACAGCTTATTGAAAAAGCA
GGAGAAGGCTCAGCCACCTAAGCTTAAGTTTTGGCAGCGCGGTTACGCGTTGTTCACTCTAGGTGTACTCGGGGTTGCAC
TGGGAATGGTGGGGGGCTACTGGGGGTGGCCTTGGTTTTATACCACGCCTTATGCCGCGCCACAGCGCATCACTACGTTG
AATGAGGCCTCTCAAACTCAAGCACTGCTCAACGACTCTTCCACAAGTGAGCGTGCGCGTTGGCAACATGATCTGATCCC
GCTGTATCGCGATACTTTGCAGCAGAATTTAACCATCTCGTTTAGTGAACCTAAGCGACATGCCATCACTCAGCTGAATC
TATTGCGCACTCTTTATCCTGAAAACGAGCAAGTGAATGCACTGAGTCAAGAGTTTGCCCTTCAGCAGCAACAAGCGTTG
GAGCAAACCGCGCTGTTCGTGGCTAAGTTCAGCGAAATTCGCACCAAAATGGCCAATATCTCGTTATTGGCTAAGCGAGG
GAAATGGGCTGAGTTAGAAAAGCAGACCAAATCATTAGAAGAGTTCGCGGTCAGCCTATCACCGATTTATGGTCGAGTTG
ACTATGTGCAAGGCCTCCTTGAACAGGGCGATGTCACAAATGCCCAGAAAGAGTTTGCGATCCTCAAACAAAGGCTAGAT
AGCCTAAGTTGGAAAATTGCCGAGCTTGAGCAGCGTATCGGCGATGCGGCTTTGTTGCAGTGA