Detailed information of component protein


Summary

Component ID T6CP009599
Component protein type TssE
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (142 a.a.); Nucleotide sequence (426 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC0395_RS00150
Coordinate (Strand) 33388..33813 (-)
NCBI ID WP_000220998.1
RefSeq NC_009456
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 9.6e-14 38..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 142 a.a.    

>T6CP009599 NC_009456:c33813-33388 [Vibrio cholerae O395] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRADQDSFNSLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*

  Nucleotide sequence: 426 bp    

>T6CP009599 NC_009456:c33813-33388 [Vibrio cholerae O395] [TssE]
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGACGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGAGCGGATCAAGATAGCTTTAACTCGCT
GACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTCTGTTATTGGATC
AAAGCAGAAAATATCGAGTGTTTTAA