Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA14_RS17475 |
Coordinate (Strand) | 3827167..3827574 (-) |
NCBI ID | WP_003140089.1 |
RefSeq | NC_008463 |
Uniprot ID | A0A0H2Z9J5_PSEAB, A0A6N0KHJ1_9PSED |
KEGG ID | pau:PA14_43020 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 4.4e-16 | 26..113 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-135 | MTGYGSLFERLNGDADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLSQARSAIEGFIEAYEPRLSNVRVVSLPRDNDQLRLAFSIEGLLEVEGFKRQVSFSACLDGSGQVKVS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.8167 | - | - |
Protein sequence: 136 a.a.
>T6CP009592 NC_008463:c3827574-3827167 [Pseudomonas aeruginosa UCBPP-PA14] [TssE]
MTGYGSLFERLNGDADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLSQARSAIEGFIE
AYEPRLSNVRVVSLPRDNDQLRLAFSIEGLLEVEGFKRQVSFSACLDGSGQVKVS*
MTGYGSLFERLNGDADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLSQARSAIEGFIE
AYEPRLSNVRVVSLPRDNDQLRLAFSIEGLLEVEGFKRQVSFSACLDGSGQVKVS*
Nucleotide sequence: 408 bp
>T6CP009592 NC_008463:c3827574-3827167 [Pseudomonas aeruginosa UCBPP-PA14] [TssE]
ATGACCGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAGGTTTCCGC
CATGGCGTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACGCTGTCCGACTACGGGT
TGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACTCCCTGAGCCAGGCCCGCTCGGCCATCGAAGGTTTCATCGAG
GCTTACGAACCGCGCTTGAGCAACGTGCGTGTCGTTTCCCTGCCGCGCGACAACGACCAGCTCCGCCTGGCCTTCAGCAT
CGAAGGGTTGCTGGAGGTGGAAGGTTTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGG
TCAGCTAA
ATGACCGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAGGTTTCCGC
CATGGCGTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACGCTGTCCGACTACGGGT
TGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACTCCCTGAGCCAGGCCCGCTCGGCCATCGAAGGTTTCATCGAG
GCTTACGAACCGCGCTTGAGCAACGTGCGTGTCGTTTCCCTGCCGCGCGACAACGACCAGCTCCGCCTGGCCTTCAGCAT
CGAAGGGTTGCTGGAGGTGGAAGGTTTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGG
TCAGCTAA