Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA14_RS17490 |
Coordinate (Strand) | 3829632..3831188 (-) |
NCBI ID | WP_003140090.1 |
RefSeq | NC_008463 |
Uniprot ID | A0A0H2Z9M2_PSEAB |
KEGG ID | pau:PA14_43050 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasJ | PF16989.7 | 5.4e-81 | 225..483 |
ImpA_N | PF06812.14 | 2.5e-30 | 17..127 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-518 | MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLSAQSKDLRVAAWLTWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTALTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAWWLKQKATDLRALRLNRTMLWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADLLVELEASLARAPFWFDGQRLVWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISVHVMPHLQNDSAPRKVETVALQAEWDVALDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDVLHLLHSCCELLPQNHAVRERKEDIYRRLCHLDLEVVLE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9923 | - | - |
Protein sequence: 519 a.a.
>T6CP009591 NC_008463:c3831188-3829632 [Pseudomonas aeruginosa UCBPP-PA14] [TssA]
MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLSAQSKDLRVAAWL
TWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTA
LTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAW
WLKQKATDLRALRLNRTMLWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADLLVELEASLARAPFWFDGQRL
VWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISVHVMPHLQNDSAPRKVETVALQAEWDVA
LDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDV
LHLLHSCCELLPQNHAVRERKEDIYRRLCHLDLEVVLE*
MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLSAQSKDLRVAAWL
TWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTA
LTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAW
WLKQKATDLRALRLNRTMLWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADLLVELEASLARAPFWFDGQRL
VWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISVHVMPHLQNDSAPRKVETVALQAEWDVA
LDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDV
LHLLHSCCELLPQNHAVRERKEDIYRRLCHLDLEVVLE*
Nucleotide sequence: 1557 bp
>T6CP009591 NC_008463:c3831188-3829632 [Pseudomonas aeruginosa UCBPP-PA14] [TssA]
ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTTGCGGGTGA
GGATGTGCGTTTTTCCAGCGAATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTCCATGAGAACGGCCAGA
CCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCTTAGTGCCCAATCCAAGGACCTGCGTGTTGCAGCCTGGTTG
ACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGACTGGGATTGCTGGAACGTCTGTGCAGCCGGCA
TTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCCGCGGCCATTGCCTGGCTGGTGCCCCGGCTGGAGCAGGCGC
TGAACGAGAACGTACCGATCAAGGAGCAACTCCCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCG
CTGACCGCGCAACTGGGCGACGACGCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGC
CGACAACCAGCCCGAACCTGGCGTGGTCGGCGCCGTGGTGGCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGG
GTGCGCCCATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCGCACGCCCCCTGTGCGCCTGG
TGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGGACGATGCTCTGGCTGCCCATCGAGTCCATGCC
CGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTACCAGGAGCGTTTCGCCC
AGGGCCTGTACGCCGATCTCCTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCGTTCTGGTTCGACGGCCAGCGCCTG
GTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGATGCGGGAAGTCGAAATGCATTTCGCCTTGCTCCTGCAGCG
TCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGACGGCAGCGCATTCGCCGATGCGGCCACCCGTGGCTGGATCAGCGTCC
ATGTCATGCCCCATCTCCAGAACGACAGTGCGCCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCC
CTGGACGAGGTCCAGCCGGTGTTGCGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGC
CCACGGCGGGCGCGCCCGGTTCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCA
AGACCCAGCTGGAGAGCCTCGACCATCAGTTGCACGAATCGGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTA
CTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGCAAGGAAGACATTTATCGCAG
GCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG
ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTTGCGGGTGA
GGATGTGCGTTTTTCCAGCGAATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTCCATGAGAACGGCCAGA
CCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCTTAGTGCCCAATCCAAGGACCTGCGTGTTGCAGCCTGGTTG
ACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGACTGGGATTGCTGGAACGTCTGTGCAGCCGGCA
TTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCCGCGGCCATTGCCTGGCTGGTGCCCCGGCTGGAGCAGGCGC
TGAACGAGAACGTACCGATCAAGGAGCAACTCCCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCG
CTGACCGCGCAACTGGGCGACGACGCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGC
CGACAACCAGCCCGAACCTGGCGTGGTCGGCGCCGTGGTGGCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGG
GTGCGCCCATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCGCACGCCCCCTGTGCGCCTGG
TGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGGACGATGCTCTGGCTGCCCATCGAGTCCATGCC
CGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTACCAGGAGCGTTTCGCCC
AGGGCCTGTACGCCGATCTCCTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCGTTCTGGTTCGACGGCCAGCGCCTG
GTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGATGCGGGAAGTCGAAATGCATTTCGCCTTGCTCCTGCAGCG
TCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGACGGCAGCGCATTCGCCGATGCGGCCACCCGTGGCTGGATCAGCGTCC
ATGTCATGCCCCATCTCCAGAACGACAGTGCGCCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCC
CTGGACGAGGTCCAGCCGGTGTTGCGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGC
CCACGGCGGGCGCGCCCGGTTCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCA
AGACCCAGCTGGAGAGCCTCGACCATCAGTTGCACGAATCGGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTA
CTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGCAAGGAAGACATTTATCGCAG
GCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG