Detailed information of component protein


Summary

Component ID T6CP009590
Component protein type TssD
T6SS ID (Type) T6SS00152 experimental (Type i1)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
[1] Barret M, Egan F, Fargier E, et al. Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology (Reading). 2011 Jun;157(Pt 6):1726-1739. doi: 10.1099/mic.0.048645-0. Epub 2011 Apr 7. PMID: 21474537
[2] Lesic B, Starkey M, He J, et al. Quorum sensing differentially regulates Pseudomonas aeruginosa type VI secretion locus I and homologous loci II and III, which are required for pathogenesis. Microbiology (Reading). 2009 Sep;155(Pt 9):2845-2855. doi: 10.1099/mic.0.029082-0. Epub 2009 Jun 4. PMID: 19497948
[3] Hachani A, Allsopp LP, Oduko Y, et al. The VgrG proteins are "à la carte" delivery systems for bacterial type VI effectors. J Biol Chem. 2014 Jun 20;289(25):17872-84. doi: 10.1074/jbc.M114.563429. Epub 2014 May 2. PMID: 24794869
[4] Jones C, Hachani A, Manoli E, et al. An rhs gene linked to the second type VI secretion cluster is a feature of the Pseudomonas aeruginosa strain PA14. J Bacteriol. 2014 Feb;196(4):800-10. doi: 10.1128/JB.00863-13. Epub 2013 Dec 6. PMID: 24317402
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PA14_RS17495
Coordinate (Strand) 3831886..3832404 (+)
NCBI ID WP_003083317.1
RefSeq NC_008463
Uniprot ID A0A1C7BJS5_PSEAI, A0A0H2Z8M3_PSEAB, MAJE_PSEAE, A0A6N0KTJ4_9PSED, B3G1V5_PSEAI, A0A3S4MNP5_PSEFL
KEGG ID pau:PA14_03240, pae:PA5267, pae:PA1512, pau:PA14_43070, pau:PA14_44890, pae:PA0263, pau:PA14_69560
PDB ID 3HE1
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.5e-39 6..155
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRSPVAG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9168 - -


  Protein sequence: 173 a.a.    

>T6CP009590 NC_008463:3831886-3832404 [Pseudomonas aeruginosa UCBPP-PA14] [TssD]
MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPL
LLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGT
SGSDDWRSPVAG*

  Nucleotide sequence: 519 bp    

>T6CP009590 NC_008463:3831886-3832404 [Pseudomonas aeruginosa UCBPP-PA14] [TssD]
ATGGCAACCCCCGCCTATATGTCCATCACCGGCACCAAGCAGGGCCTGATCACCGCCGGCGCCTTCACCGAGGATTCGGT
CGGCAACACCTACCAGGAAGGCCACGAGGACCAAGTGATGGTCCAGGGCTTCAACCACGAAGTGATCATCCCGCGCGATC
CGCAGTCCGGCCAGCCGACCGGTCAGCGCGTGCACAAGCCGGTGGTCATCACCAAGGTCTTCGACAAGGCCTCGCCGCTG
CTGCTGGCCGCCCTGACCTCCGGCGAGCGCCTGACCAAGGTCGAGATCCAGTGGTACCGCACCTCCGCCGCCGGCACCCA
GGAGCACTACTACACCACCGTCCTGGAAGACGCGATCATCGTCGACATCAAGGACTACATGCATAACTGCCAGGACCCGG
GCAACGCCCACTTCACCCACCTGGAAGACGTGCACTTCACCTACCGCAAGATCACCTGGACCCACGAAGTCTCCGGCACC
TCCGGCTCCGACGACTGGCGCTCCCCGGTCGCCGGCTGA