Detailed information of component protein


Summary

Component ID T6CP009587
Component protein type TssA
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (675 a.a.); Nucleotide sequence (2025 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) MXAN_RS23360
Coordinate (Strand) 6013836..6015860 (+)
NCBI ID WP_011554792.1
RefSeq NC_008095
Uniprot ID Q1D306_MYXXD, A0A7Y4M6Z0_MYXXA
KEGG ID mxa:MXAN_4806
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.3e-52 370..631
ImpA_N PF06812.14 1.4e-22 17..128

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-674 MPPSLEQLRERALPWAEPVPGASPAGVQAKHEPAYEAVALEVAKLESPASNAVRWDDVVEGASELLKHTTKDLWLASYMAYGLYATRGLDGAATGTAVLAEVTERYWQDLFPEAKRLRGRANAVAWFVDRLGRILPTVDQASVSAEPLDALAVAVKRLAQLSRERFSDMAPAFGPLQDAIARLRAGLPEPEPESVPDGRTASSEDADASQPPVDGTASSQDEDTPSGEDGETVVRAADSANGTRPGAPSDSAETPTNGNGNRSAREAGNASANGKPAQANGAGNSAAPGKGNTAPGNPTAKNAPAPAKISTAQGTAKASAASQGGASANGTPAPPRAAIEVPPLPELPAAPDLSSVEAITDFLRTVGGALLGAAGALRRASPEDPLSYRLNRMGLWLHLTQPPATDGNGRTQIHPLPDLLGTKLETLEQNQRWGELLDESESALARHRFTLTLHRYSATALEGLGAAYAGARTALVQELAIQLRRMTGVETLISTLGSPLTDDATQDWLRDHVLRASAPPPAPSAAVASVSTTLALGPLSLGPSVHADSAALEAEARTLLEEGRVHEAVTRLQAAVAAASTGRARFISRLELARLCANAGQLPLARAVYDALDEEVSAHALDTWEPALAAACLEGWLQTRTEAEKESGPVAVKFRNRYRRLALLDSSATLRVGA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9099 - -



  Protein sequence: 675 a.a.    

>T6CP009587 NC_008095:6013836-6015860 [Myxococcus xanthus DK 1622] [TssA]
MPPSLEQLRERALPWAEPVPGASPAGVQAKHEPAYEAVALEVAKLESPASNAVRWDDVVEGASELLKHTTKDLWLASYMA
YGLYATRGLDGAATGTAVLAEVTERYWQDLFPEAKRLRGRANAVAWFVDRLGRILPTVDQASVSAEPLDALAVAVKRLAQ
LSRERFSDMAPAFGPLQDAIARLRAGLPEPEPESVPDGRTASSEDADASQPPVDGTASSQDEDTPSGEDGETVVRAADSA
NGTRPGAPSDSAETPTNGNGNRSAREAGNASANGKPAQANGAGNSAAPGKGNTAPGNPTAKNAPAPAKISTAQGTAKASA
ASQGGASANGTPAPPRAAIEVPPLPELPAAPDLSSVEAITDFLRTVGGALLGAAGALRRASPEDPLSYRLNRMGLWLHLT
QPPATDGNGRTQIHPLPDLLGTKLETLEQNQRWGELLDESESALARHRFTLTLHRYSATALEGLGAAYAGARTALVQELA
IQLRRMTGVETLISTLGSPLTDDATQDWLRDHVLRASAPPPAPSAAVASVSTTLALGPLSLGPSVHADSAALEAEARTLL
EEGRVHEAVTRLQAAVAAASTGRARFISRLELARLCANAGQLPLARAVYDALDEEVSAHALDTWEPALAAACLEGWLQTR
TEAEKESGPVAVKFRNRYRRLALLDSSATLRVGA*

  Nucleotide sequence: 2025 bp    

>T6CP009587 NC_008095:6013836-6015860 [Myxococcus xanthus DK 1622] [TssA]
ATGCCTCCCTCCCTGGAACAGCTTCGTGAACGTGCCCTCCCCTGGGCCGAGCCCGTGCCGGGGGCGTCCCCGGCCGGCGT
GCAGGCGAAGCACGAGCCCGCATACGAGGCCGTCGCGCTGGAAGTCGCGAAGTTGGAGTCTCCGGCCAGCAACGCCGTGC
GCTGGGATGACGTCGTCGAGGGCGCCAGCGAGCTGCTGAAGCACACCACCAAGGACCTCTGGCTCGCCTCGTACATGGCC
TATGGCCTGTATGCCACGCGAGGCCTGGACGGCGCGGCCACCGGCACGGCCGTGCTCGCCGAGGTGACGGAGCGCTACTG
GCAGGACCTCTTCCCGGAGGCGAAGCGGCTGCGCGGCCGAGCCAACGCCGTGGCCTGGTTCGTGGACCGGCTGGGCCGCA
TCCTGCCCACCGTAGACCAGGCCTCCGTGAGCGCGGAGCCCCTGGATGCGCTGGCGGTCGCGGTGAAGCGCCTGGCCCAG
CTCTCACGCGAGCGGTTCTCCGACATGGCCCCCGCGTTCGGGCCGCTCCAGGATGCCATCGCCCGGCTCCGCGCCGGACT
CCCCGAGCCCGAACCCGAGAGCGTACCGGATGGACGCACCGCGTCCTCGGAGGACGCAGACGCCTCGCAGCCGCCGGTGG
ATGGGACTGCGTCGTCCCAGGACGAGGACACCCCGTCCGGCGAGGATGGAGAGACCGTTGTGCGCGCGGCGGACTCCGCG
AATGGCACGCGGCCAGGAGCGCCTTCGGACAGCGCTGAAACGCCCACGAACGGCAATGGCAACCGCTCCGCTCGGGAGGC
GGGCAATGCCAGCGCCAACGGCAAACCTGCTCAAGCCAACGGTGCTGGAAACAGCGCCGCCCCGGGTAAAGGCAACACCG
CCCCGGGCAATCCCACGGCGAAGAACGCCCCCGCCCCGGCCAAAATCAGCACCGCTCAGGGCACCGCCAAAGCCAGCGCA
GCCAGCCAGGGCGGCGCCTCCGCCAACGGCACACCCGCACCACCGCGCGCCGCCATCGAAGTCCCGCCCCTCCCCGAGCT
TCCCGCCGCCCCGGATCTGTCCAGCGTGGAGGCGATCACCGACTTCCTGCGCACCGTGGGCGGCGCGCTGCTGGGAGCCG
CGGGCGCGCTGCGCCGGGCCAGCCCCGAGGATCCGCTCTCCTACCGCCTCAACCGCATGGGCCTGTGGTTGCACCTGACC
CAGCCGCCCGCCACGGATGGCAATGGCCGCACCCAGATTCACCCACTGCCGGACCTGCTGGGAACCAAGCTGGAGACCCT
GGAGCAGAACCAGCGCTGGGGCGAGCTGCTGGACGAGTCCGAGTCGGCCCTGGCCCGCCACCGCTTCACGCTGACGCTCC
ACCGGTACAGCGCCACCGCCCTGGAGGGGCTGGGTGCCGCGTACGCCGGGGCTCGCACCGCGCTGGTACAGGAATTGGCC
ATCCAGCTCCGCCGCATGACCGGCGTGGAGACGCTCATCTCCACCTTGGGAAGCCCGCTCACGGACGACGCCACCCAGGA
CTGGCTGCGCGACCACGTCCTCCGCGCGAGCGCGCCCCCACCCGCCCCTTCCGCCGCCGTGGCGTCGGTGTCCACGACCC
TGGCGCTGGGGCCCCTGTCGCTGGGCCCGTCTGTCCATGCCGACAGCGCGGCGCTGGAAGCCGAAGCCCGCACGTTGCTG
GAGGAAGGCCGTGTCCACGAAGCTGTCACCCGGTTGCAGGCCGCCGTCGCCGCCGCCAGCACCGGCCGCGCCCGCTTCAT
CTCCCGGCTGGAGCTGGCGCGGTTGTGTGCCAATGCGGGCCAGTTGCCGCTCGCGCGCGCCGTCTATGACGCGCTGGACG
AAGAGGTCTCCGCCCACGCGCTCGACACCTGGGAGCCAGCGCTCGCCGCCGCGTGTCTGGAGGGGTGGCTGCAAACCCGC
ACCGAAGCCGAAAAGGAGTCTGGACCGGTGGCAGTGAAATTTCGAAACCGGTATCGTCGTCTAGCGTTGCTGGACTCTTC
CGCCACGCTGCGCGTCGGCGCTTGA