Detailed information of component protein
Summary
External database links
Locus tag (Gene) | MXAN_RS23380 |
Coordinate (Strand) | 6018642..6019037 (+) |
NCBI ID | WP_011554796.1 |
RefSeq | NC_008095 |
Uniprot ID | Q1D302_MYXXD, A0A4Y6AL10_MYXXA |
KEGG ID | mxa:MXAN_4810 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 1.6e-17 | 25..109 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-131 | MGSRGLLSRIAEGNGTLAPPGDVVESIAEHLRNLLNTRKGESVASPGYGILDLNDIVHSYPSAIPRMTQSIRQAIQEFEPRLKSVVVHYNADPVDPTALRFDITAQLATRDRRGMVRFHTQVHPGGRVDLW |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9691 | - | - |
Protein sequence: 132 a.a.
>T6CP009584 NC_008095:6018642-6019037 [Myxococcus xanthus DK 1622] [TssE]
MGSRGLLSRIAEGNGTLAPPGDVVESIAEHLRNLLNTRKGESVASPGYGILDLNDIVHSYPSAIPRMTQSIRQAIQEFEP
RLKSVVVHYNADPVDPTALRFDITAQLATRDRRGMVRFHTQVHPGGRVDLW*
MGSRGLLSRIAEGNGTLAPPGDVVESIAEHLRNLLNTRKGESVASPGYGILDLNDIVHSYPSAIPRMTQSIRQAIQEFEP
RLKSVVVHYNADPVDPTALRFDITAQLATRDRRGMVRFHTQVHPGGRVDLW*
Nucleotide sequence: 396 bp
>T6CP009584 NC_008095:6018642-6019037 [Myxococcus xanthus DK 1622] [TssE]
ATGGGCTCCCGAGGCTTGTTGTCGCGCATCGCTGAAGGCAACGGCACGCTCGCCCCGCCTGGCGACGTCGTTGAATCCAT
CGCCGAGCACCTGCGCAACCTCCTCAACACGCGCAAGGGAGAGTCCGTGGCCTCACCCGGCTACGGCATCCTGGACCTGA
ACGACATCGTCCACTCCTACCCGTCGGCGATACCGCGGATGACGCAGTCCATCCGGCAGGCCATCCAGGAGTTCGAACCG
CGCCTGAAGAGCGTGGTGGTGCACTACAACGCGGACCCGGTGGACCCGACGGCGCTGCGCTTCGACATCACCGCCCAGTT
GGCCACGCGGGATCGACGAGGCATGGTGCGTTTCCATACCCAGGTGCACCCGGGCGGACGCGTGGACCTGTGGTGA
ATGGGCTCCCGAGGCTTGTTGTCGCGCATCGCTGAAGGCAACGGCACGCTCGCCCCGCCTGGCGACGTCGTTGAATCCAT
CGCCGAGCACCTGCGCAACCTCCTCAACACGCGCAAGGGAGAGTCCGTGGCCTCACCCGGCTACGGCATCCTGGACCTGA
ACGACATCGTCCACTCCTACCCGTCGGCGATACCGCGGATGACGCAGTCCATCCGGCAGGCCATCCAGGAGTTCGAACCG
CGCCTGAAGAGCGTGGTGGTGCACTACAACGCGGACCCGGTGGACCCGACGGCGCTGCGCTTCGACATCACCGCCCAGTT
GGCCACGCGGGATCGACGAGGCATGGTGCGTTTCCATACCCAGGTGCACCCGGGCGGACGCGTGGACCTGTGGTGA