Detailed information of component protein


Summary

Component ID T6CP009456
Component protein type TssD
T6SS ID (Type) T6SS00344 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) KP1_RS11245
Coordinate (Strand) 2304685..2305176 (+)
NCBI ID WP_002902160.1
RefSeq NC_012731
Uniprot ID A0A0H3GMC3_KLEPH, A0A7U7IJ29_KLEPN, W1DW38_KLEPN, W1ERT8_KLEPN, W1HVR0_KLEPN, A0A1F2LWX0_9ENTR, A0A223UC57_9ENTR, A0A264BVD1_KLEVA, A0A7U2ZMJ7_9ENTR, A0A652Q1A1_9ENTR, A0A6I4LNL9_9ENTR, A6T838_KLEP7, A0A3S4LPK0_KLEAE, A0A0J2G7E8_KLEPN, A0A1Y0Q1G9_KLEPN
KEGG ID kpg:KPNIH32_11835, kpm:KPHS_23020, kpx:PMK1_03725, kpnu:LI86_14600, kvq:SP68_00350, kpw:KPNIH30_11995, kpn:KPN_01327, kpy:KPNIH31_11050, kpb:FH42_02920, kpt:VK055_1101, kpne:KU54_014665
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.5e-37 6..146

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-163 MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNERATA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9879 - -



  Protein sequence: 164 a.a.    

>T6CP009456 NC_012731:2304685-2305176 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssD]
MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
ATA*

  Nucleotide sequence: 492 bp    

>T6CP009456 NC_012731:2304685-2305176 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssD]
ATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATCGTGA
AGGCAGTATCGAAGTGGTGGCCCAGGAGCATAACCTGTACATCCCGACCGATAACAACACCGGCAAACTGACCGGCACGC
GTATTCATACGCCGTTCCTGTTCACCAAGGAGATCGACTCCTCCAGCCCCTACCTGTACAAGGCGGTGACCACCGGCCAG
ACCCTGAAATCCGCCGAGTTCAAGTGGTACCGAATCAACGATGCCGGCCAGGAAGTGGAGTATTTCAATACCAAACTTGA
GAACGTCAAGGTGGTGAAAGTGAATCCCCTGATGCACGACATCAAAAACCCCGCCTACGAGAAGCACAACCATCTGGAAC
AGATTGAGCTGCGCTACGAGAAGATCACCTGGACCTATAAAGACGGCAACATCATTCACTCCGATAGCTGGAACGAACGC
GCCACCGCGTAA