Detailed information of component protein


Summary

Component ID T6CP009438
Component protein type TssA
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (478 a.a.); Nucleotide sequence (1434 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01750
Coordinate (Strand) 385973..387406 (-)
NCBI ID WP_011144749.1
RefSeq NC_005126
Uniprot ID A0A6L9JJF2_PHOLM, Q7N9H6_PHOLL
KEGG ID plu:plu0360, plum:A4R40_01755
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 9e-81 218..458
ImpA_N PF06812.14 2.1e-11 28..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-477 MDIRKQFDWQGLLLTPLSDELISRALDENEPAWEYIDGEMVKLGSLAHSSLNIEEIQRQALQLFSEKSKDFRLMVHLLRTLQHGSHPAELILAMELLADYIPHYWQAAWPHKPQLKRRLAQQVIKRFDAAQPGFCEQADETQREEAQGALAHLAQCWHTDEPALAKEIDQLRPRYARKPQPKPAAAPAEPAETTAPSANTSALTSPPIPDVTVDSAGEKAWKQTLLTVADLLCERQPDSPVGYRLRRYAIWYTLTTAPMANGTGKTPLAPTSADRTADYLAKLPAADNALLQQIEQSLTLAPYWLDGHALAAQAAGKLGYHAVADAIRDELRAFLDRLPVLQNLSFSDMSPFISDATLNWLHPPATATVSSGSTPEQDAIWHCFQQHGLEAALHAAEQYQQQLTEPRDQFYGQLLTAQLLEQAGMHALAQQHYRQLRQAGQHLSLADWEPGLLAALAEKAPMTAPAKATTANRSVNP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9694 - -


  Protein sequence: 478 a.a.    

>T6CP009438 NC_005126:c387406-385973 [Photorhabdus laumondii subsp. laumondii TTO1] [TssA]
MDIRKQFDWQGLLLTPLSDELISRALDENEPAWEYIDGEMVKLGSLAHSSLNIEEIQRQALQLFSEKSKDFRLMVHLLRT
LQHGSHPAELILAMELLADYIPHYWQAAWPHKPQLKRRLAQQVIKRFDAAQPGFCEQADETQREEAQGALAHLAQCWHTD
EPALAKEIDQLRPRYARKPQPKPAAAPAEPAETTAPSANTSALTSPPIPDVTVDSAGEKAWKQTLLTVADLLCERQPDSP
VGYRLRRYAIWYTLTTAPMANGTGKTPLAPTSADRTADYLAKLPAADNALLQQIEQSLTLAPYWLDGHALAAQAAGKLGY
HAVADAIRDELRAFLDRLPVLQNLSFSDMSPFISDATLNWLHPPATATVSSGSTPEQDAIWHCFQQHGLEAALHAAEQYQ
QQLTEPRDQFYGQLLTAQLLEQAGMHALAQQHYRQLRQAGQHLSLADWEPGLLAALAEKAPMTAPAKATTANRSVNP*

  Nucleotide sequence: 1434 bp    

>T6CP009438 NC_005126:c387406-385973 [Photorhabdus laumondii subsp. laumondii TTO1] [TssA]
ATGGATATCAGGAAACAATTTGACTGGCAGGGCCTCCTGCTGACCCCCCTGTCGGATGAACTCATCAGCCGGGCGCTGGA
TGAAAACGAACCCGCCTGGGAATATATCGACGGGGAGATGGTTAAGCTGGGATCACTGGCCCATTCCAGCCTGAATATTG
AAGAGATCCAGCGTCAGGCGCTGCAACTGTTCAGCGAAAAAAGCAAAGATTTCAGACTGATGGTTCATTTGCTGCGGACA
CTGCAACACGGCAGTCATCCCGCTGAACTCATCCTGGCAATGGAGCTGTTAGCCGATTACATCCCGCATTACTGGCAGGC
AGCCTGGCCACACAAACCGCAGCTCAAACGCCGCCTGGCGCAACAGGTGATTAAACGGTTTGACGCTGCGCAACCCGGCT
TCTGCGAACAGGCGGATGAGACGCAGCGCGAAGAGGCGCAGGGCGCACTGGCACATCTGGCACAATGCTGGCATACCGAT
GAACCGGCTCTGGCTAAAGAGATCGACCAGTTACGCCCCCGCTATGCCCGTAAACCTCAGCCCAAACCGGCAGCCGCGCC
GGCTGAACCGGCCGAAACGACAGCACCATCGGCAAACACTTCAGCACTGACATCCCCCCCCATACCGGATGTCACCGTAG
ACAGTGCCGGTGAAAAAGCCTGGAAACAGACGCTCCTGACCGTGGCTGACCTGCTGTGCGAACGCCAGCCTGATTCCCCT
GTCGGTTACCGTCTGCGTCGTTATGCTATCTGGTACACCCTGACCACAGCACCGATGGCGAATGGCACCGGCAAAACACC
GCTGGCACCGACGTCGGCAGACCGCACCGCCGATTATCTGGCGAAACTCCCGGCGGCGGATAACGCCCTGCTGCAACAGA
TAGAACAGAGTCTGACCCTGGCCCCTTACTGGCTGGACGGACACGCTCTCGCGGCGCAGGCCGCCGGCAAACTGGGTTAC
CACGCCGTGGCTGACGCTATCCGCGATGAACTCCGGGCCTTTCTTGACCGTCTGCCGGTCCTGCAAAACCTGTCTTTCTC
CGATATGAGCCCGTTTATCTCCGACGCCACGCTGAACTGGCTGCATCCCCCGGCGACCGCCACCGTCAGCAGCGGCTCCA
CGCCGGAACAGGACGCCATCTGGCACTGTTTTCAGCAACACGGACTGGAAGCCGCCCTCCACGCCGCGGAGCAATATCAG
CAACAGCTGACCGAACCGCGGGATCAATTCTACGGTCAGTTACTGACGGCCCAGTTACTGGAGCAGGCGGGCATGCACGC
GCTGGCACAACAACATTACCGCCAGCTGCGCCAGGCAGGACAACACCTGTCACTCGCCGACTGGGAACCCGGCCTGCTGG
CGGCCCTGGCAGAAAAAGCCCCGATGACCGCCCCCGCCAAGGCGACGACCGCAAACAGGAGCGTTAACCCATGA