Detailed information of component protein
Summary
| Component ID | T6CP009381 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00382  (Type i3) |
| Strain | Xenorhabdus bovienii SS-2004 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XBJ1_RS08935 |
| Coordinate (Strand) | 2061568..2062071 (-) |
| NCBI ID | WP_012988553.1 |
| RefSeq | NC_013892 |
| Uniprot ID | D3V3B2_XENBS |
| KEGG ID | xbo:XBJ1_2101 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 8.2e-18 | 13..143 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MSDFNSMYNTHSFVQFEGIEGESQTKGYEKWIGVQFISRAIINPANGLTDIGSWGSGKGILSHFMLHINYDKAISALEKYAVTGKHIKTTKIHILRFIGDNEPAIWAKYELTNTYISEIGSGQPSDNVITVGLKMKKFQFNYTPADYEGKKQAETTWTWDLEKNVIE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9928 | - | - |
Protein sequence: 168 a.a.
>T6CP009381 NC_013892:c2062071-2061568 [Xenorhabdus bovienii SS-2004] [TssD]
MSDFNSMYNTHSFVQFEGIEGESQTKGYEKWIGVQFISRAIINPANGLTDIGSWGSGKGILSHFMLHINYDKAISALEKY
AVTGKHIKTTKIHILRFIGDNEPAIWAKYELTNTYISEIGSGQPSDNVITVGLKMKKFQFNYTPADYEGKKQAETTWTWD
LEKNVIE*
MSDFNSMYNTHSFVQFEGIEGESQTKGYEKWIGVQFISRAIINPANGLTDIGSWGSGKGILSHFMLHINYDKAISALEKY
AVTGKHIKTTKIHILRFIGDNEPAIWAKYELTNTYISEIGSGQPSDNVITVGLKMKKFQFNYTPADYEGKKQAETTWTWD
LEKNVIE*
Nucleotide sequence: 504 bp
>T6CP009381 NC_013892:c2062071-2061568 [Xenorhabdus bovienii SS-2004] [TssD]
ATGTCTGATTTCAATTCCATGTATAATACTCATTCTTTCGTTCAATTCGAGGGCATTGAGGGTGAATCGCAAACTAAAGG
TTATGAAAAATGGATCGGTGTCCAATTTATTAGTCGTGCCATAATTAACCCTGCTAATGGCTTAACCGATATAGGAAGCT
GGGGTTCAGGTAAAGGTATTTTAAGCCATTTCATGCTTCATATTAATTATGACAAAGCAATAAGCGCCTTAGAAAAATAT
GCTGTCACGGGTAAACATATTAAGACAACAAAAATTCATATACTTCGCTTCATTGGCGATAATGAACCGGCAATATGGGC
TAAATATGAACTTACCAATACTTATATTTCTGAAATCGGCAGTGGACAGCCTTCCGATAATGTCATCACGGTTGGCCTAA
AAATGAAAAAATTCCAATTCAATTACACGCCAGCAGATTATGAAGGTAAAAAACAGGCTGAAACCACCTGGACCTGGGAT
CTTGAAAAAAATGTCATCGAATAA
ATGTCTGATTTCAATTCCATGTATAATACTCATTCTTTCGTTCAATTCGAGGGCATTGAGGGTGAATCGCAAACTAAAGG
TTATGAAAAATGGATCGGTGTCCAATTTATTAGTCGTGCCATAATTAACCCTGCTAATGGCTTAACCGATATAGGAAGCT
GGGGTTCAGGTAAAGGTATTTTAAGCCATTTCATGCTTCATATTAATTATGACAAAGCAATAAGCGCCTTAGAAAAATAT
GCTGTCACGGGTAAACATATTAAGACAACAAAAATTCATATACTTCGCTTCATTGGCGATAATGAACCGGCAATATGGGC
TAAATATGAACTTACCAATACTTATATTTCTGAAATCGGCAGTGGACAGCCTTCCGATAATGTCATCACGGTTGGCCTAA
AAATGAAAAAATTCCAATTCAATTACACGCCAGCAGATTATGAAGGTAAAAAACAGGCTGAAACCACCTGGACCTGGGAT
CTTGAAAAAAATGTCATCGAATAA