Detailed information of component protein
Summary
| Component ID | T6CP009367 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS00548  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (136 a.a.); Nucleotide sequence (408 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_23150 |
| Coordinate (Strand) | 2348265..2348672 (+) |
| NCBI ID | YP_005226615.1 |
| RefSeq | NC_016845 |
| Uniprot ID | A0A0H3GNT0_KLEPH |
| KEGG ID | kpm:KPHS_23150 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpA_N | PF06812.14 | 5.8e-22 | 33..127 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-135 | MSILQNLVAASQLDESALRQQARSRQAQWQSWLAPVSDAQPTGDDPGYDDDFQRIREEVNKISGVDTELICQLAEKLLTQTCKDLRVITFYVWARLQRDGETGLAEGVTLLAAMLERFGAMLHPQRERSCKSALE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9720 | - | - |
Protein sequence: 136 a.a.
>T6CP009367 NC_016845:2348265-2348672 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssA]
MSILQNLVAASQLDESALRQQARSRQAQWQSWLAPVSDAQPTGDDPGYDDDFQRIREEVNKISGVDTELICQLAEKLLTQ
TCKDLRVITFYVWARLQRDGETGLAEGVTLLAAMLERFGAMLHPQRERSCKSALE*
MSILQNLVAASQLDESALRQQARSRQAQWQSWLAPVSDAQPTGDDPGYDDDFQRIREEVNKISGVDTELICQLAEKLLTQ
TCKDLRVITFYVWARLQRDGETGLAEGVTLLAAMLERFGAMLHPQRERSCKSALE*
Nucleotide sequence: 408 bp
>T6CP009367 NC_016845:2348265-2348672 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssA]
ATGAGCATTTTACAAAATTTGGTTGCCGCCAGTCAGTTGGATGAAAGCGCACTGCGCCAGCAGGCCCGGTCACGCCAGGC
GCAGTGGCAGTCCTGGCTTGCGCCAGTCAGTGACGCCCAACCAACCGGGGACGATCCGGGCTATGACGATGATTTTCAGC
GTATCCGCGAGGAGGTCAATAAGATCTCCGGCGTCGATACCGAACTGATTTGCCAGCTGGCAGAAAAACTGCTGACTCAG
ACCTGCAAGGATCTGCGCGTGATCACCTTTTACGTGTGGGCGCGTCTGCAGCGGGATGGTGAAACCGGTCTGGCGGAGGG
CGTTACGCTGCTGGCGGCAATGCTTGAGCGGTTTGGGGCTATGCTCCATCCCCAGCGTGAACGTAGCTGTAAATCAGCGC
TGGAATAG
ATGAGCATTTTACAAAATTTGGTTGCCGCCAGTCAGTTGGATGAAAGCGCACTGCGCCAGCAGGCCCGGTCACGCCAGGC
GCAGTGGCAGTCCTGGCTTGCGCCAGTCAGTGACGCCCAACCAACCGGGGACGATCCGGGCTATGACGATGATTTTCAGC
GTATCCGCGAGGAGGTCAATAAGATCTCCGGCGTCGATACCGAACTGATTTGCCAGCTGGCAGAAAAACTGCTGACTCAG
ACCTGCAAGGATCTGCGCGTGATCACCTTTTACGTGTGGGCGCGTCTGCAGCGGGATGGTGAAACCGGTCTGGCGGAGGG
CGTTACGCTGCTGGCGGCAATGCTTGAGCGGTTTGGGGCTATGCTCCATCCCCAGCGTGAACGTAGCTGTAAATCAGCGC
TGGAATAG