Detailed information of component protein


Summary

Component ID T6CP009367
Component protein type TssA
T6SS ID (Type) T6SS00548 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (136 a.a.); Nucleotide sequence (408 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) KPHS_23150
Coordinate (Strand) 2348265..2348672 (+)
NCBI ID YP_005226615.1
RefSeq NC_016845
Uniprot ID A0A0H3GNT0_KLEPH
KEGG ID kpm:KPHS_23150
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 5.8e-22 33..127

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-135 MSILQNLVAASQLDESALRQQARSRQAQWQSWLAPVSDAQPTGDDPGYDDDFQRIREEVNKISGVDTELICQLAEKLLTQTCKDLRVITFYVWARLQRDGETGLAEGVTLLAAMLERFGAMLHPQRERSCKSALE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9720 - -



  Protein sequence: 136 a.a.    

>T6CP009367 NC_016845:2348265-2348672 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssA]
MSILQNLVAASQLDESALRQQARSRQAQWQSWLAPVSDAQPTGDDPGYDDDFQRIREEVNKISGVDTELICQLAEKLLTQ
TCKDLRVITFYVWARLQRDGETGLAEGVTLLAAMLERFGAMLHPQRERSCKSALE*

  Nucleotide sequence: 408 bp    

>T6CP009367 NC_016845:2348265-2348672 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssA]
ATGAGCATTTTACAAAATTTGGTTGCCGCCAGTCAGTTGGATGAAAGCGCACTGCGCCAGCAGGCCCGGTCACGCCAGGC
GCAGTGGCAGTCCTGGCTTGCGCCAGTCAGTGACGCCCAACCAACCGGGGACGATCCGGGCTATGACGATGATTTTCAGC
GTATCCGCGAGGAGGTCAATAAGATCTCCGGCGTCGATACCGAACTGATTTGCCAGCTGGCAGAAAAACTGCTGACTCAG
ACCTGCAAGGATCTGCGCGTGATCACCTTTTACGTGTGGGCGCGTCTGCAGCGGGATGGTGAAACCGGTCTGGCGGAGGG
CGTTACGCTGCTGGCGGCAATGCTTGAGCGGTTTGGGGCTATGCTCCATCCCCAGCGTGAACGTAGCTGTAAATCAGCGC
TGGAATAG