Detailed information of component protein
Summary
| Component ID | T6CP009343 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00346  (Type i4b) |
| Strain | Edwardsiella ictaluri 93-146 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | NT01EI_RS11900 |
| Coordinate (Strand) | 2633808..2634299 (+) |
| NCBI ID | WP_015872008.1 |
| RefSeq | NC_012779 |
| Uniprot ID | C5B8P7_EDWI9, O52405_EDWIC |
| KEGG ID | eic:NT01EI_2739 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.2e-32 | 6..137 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAFDTYIKLDKVDGESTDAKHKKWIEVLGFAWGAGNECSMESGTQGLNTGKATMSVFRITKWMDCASVKLASAAVQGQNFPSLEVEICTQAGDKFAFCIYKFTNVAISSYDCSGASGGSDRPQETIDFAYKEVTWEYIPQDQSGKAGSKIGPEGWSLITNQKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9656 | - | - |
Protein sequence: 164 a.a.
>T6CP009343 NC_012779:2633808-2634299 [Edwardsiella ictaluri 93-146] [TssD]
MAFDTYIKLDKVDGESTDAKHKKWIEVLGFAWGAGNECSMESGTQGLNTGKATMSVFRITKWMDCASVKLASAAVQGQNF
PSLEVEICTQAGDKFAFCIYKFTNVAISSYDCSGASGGSDRPQETIDFAYKEVTWEYIPQDQSGKAGSKIGPEGWSLITN
QKK*
MAFDTYIKLDKVDGESTDAKHKKWIEVLGFAWGAGNECSMESGTQGLNTGKATMSVFRITKWMDCASVKLASAAVQGQNF
PSLEVEICTQAGDKFAFCIYKFTNVAISSYDCSGASGGSDRPQETIDFAYKEVTWEYIPQDQSGKAGSKIGPEGWSLITN
QKK*
Nucleotide sequence: 492 bp
>T6CP009343 NC_012779:2633808-2634299 [Edwardsiella ictaluri 93-146] [TssD]
ATGGCTTTTGATACCTATATCAAACTAGATAAGGTTGATGGGGAATCTACTGATGCTAAGCACAAAAAATGGATTGAAGT
ACTGGGCTTTGCATGGGGAGCAGGCAATGAGTGCTCAATGGAGAGCGGTACCCAGGGTCTGAATACCGGTAAGGCCACAA
TGTCGGTATTCCGTATAACCAAATGGATGGACTGCGCCAGTGTCAAGCTGGCCTCGGCCGCCGTTCAGGGCCAGAACTTT
CCCTCGCTGGAAGTGGAGATTTGTACCCAGGCTGGCGATAAGTTCGCCTTCTGTATCTATAAATTTACTAATGTAGCCAT
CTCCAGCTATGACTGCTCCGGGGCCTCTGGCGGAAGCGACCGCCCGCAGGAAACCATTGATTTCGCCTATAAGGAAGTGA
CTTGGGAATATATTCCCCAGGATCAGAGCGGTAAGGCGGGCAGTAAAATTGGGCCCGAGGGCTGGAGTCTTATTACCAAC
CAGAAGAAGTAA
ATGGCTTTTGATACCTATATCAAACTAGATAAGGTTGATGGGGAATCTACTGATGCTAAGCACAAAAAATGGATTGAAGT
ACTGGGCTTTGCATGGGGAGCAGGCAATGAGTGCTCAATGGAGAGCGGTACCCAGGGTCTGAATACCGGTAAGGCCACAA
TGTCGGTATTCCGTATAACCAAATGGATGGACTGCGCCAGTGTCAAGCTGGCCTCGGCCGCCGTTCAGGGCCAGAACTTT
CCCTCGCTGGAAGTGGAGATTTGTACCCAGGCTGGCGATAAGTTCGCCTTCTGTATCTATAAATTTACTAATGTAGCCAT
CTCCAGCTATGACTGCTCCGGGGCCTCTGGCGGAAGCGACCGCCCGCAGGAAACCATTGATTTCGCCTATAAGGAAGTGA
CTTGGGAATATATTCCCCAGGATCAGAGCGGTAAGGCGGGCAGTAAAATTGGGCCCGAGGGCTGGAGTCTTATTACCAAC
CAGAAGAAGTAA