Detailed information of component protein
Summary
External database links
Locus tag (Gene) | ETAE_RS11295 |
Coordinate (Strand) | 2568781..2569422 (+) |
NCBI ID | WP_012849269.1 |
RefSeq | NC_013508 |
Uniprot ID | A0A411H525_9GAMM, D0ZB41_EDWTE |
KEGG ID | etr:ETAE_2440 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS-SciN | PF12790.9 | 9.1e-08 | 45..149 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-213 | MMKNKAIWSAIGCLLLSLSGCTSDAAKQQARSSVSWRYGSQAILVNAQTAPDLNSYDGESHSLVLAVVQTRSPDAFYQLIQTPELAGLVLQGGRPPDGILQVSRYALEPGHAFRLVLDRLQEARQVGFIAAFYGLPLTQTSRLFDIPVSVTRSGILFPDWQAAPSPLALDLKLGNSGIGEAESHPLERIPAAPDPASAPTAATPIRLSDSGEP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
LIPO(Sec/SPII) | 0.9978 | pos: 20-21. LSG-CT. | MMKNKAIWSAIGCLLLSLSG |
Protein sequence: 214 a.a.
>T6CP009342 NC_013508:2568781-2569422 [Edwardsiella tarda EIB202] [TssJ]
MMKNKAIWSAIGCLLLSLSGCTSDAAKQQARSSVSWRYGSQAILVNAQTAPDLNSYDGESHSLVLAVVQTRSPDAFYQLI
QTPELAGLVLQGGRPPDGILQVSRYALEPGHAFRLVLDRLQEARQVGFIAAFYGLPLTQTSRLFDIPVSVTRSGILFPDW
QAAPSPLALDLKLGNSGIGEAESHPLERIPAAPDPASAPTAATPIRLSDSGEP*
MMKNKAIWSAIGCLLLSLSGCTSDAAKQQARSSVSWRYGSQAILVNAQTAPDLNSYDGESHSLVLAVVQTRSPDAFYQLI
QTPELAGLVLQGGRPPDGILQVSRYALEPGHAFRLVLDRLQEARQVGFIAAFYGLPLTQTSRLFDIPVSVTRSGILFPDW
QAAPSPLALDLKLGNSGIGEAESHPLERIPAAPDPASAPTAATPIRLSDSGEP*
Nucleotide sequence: 642 bp
>T6CP009342 NC_013508:2568781-2569422 [Edwardsiella tarda EIB202] [TssJ]
ATGATGAAGAATAAGGCGATCTGGAGTGCCATCGGCTGCCTGCTGCTCAGCCTGAGCGGCTGCACCTCCGACGCGGCAAA
GCAGCAGGCCCGCAGCAGCGTATCCTGGCGGTACGGCAGCCAGGCCATCTTGGTGAATGCACAAACCGCCCCGGATCTGA
ACAGCTACGACGGCGAGTCGCACAGCCTGGTGCTGGCGGTGGTGCAGACTCGCTCGCCGGACGCCTTCTATCAGTTAATC
CAAACCCCCGAACTCGCCGGCCTCGTCTTGCAGGGCGGGCGTCCCCCTGACGGAATTTTGCAGGTAAGCCGCTATGCCCT
GGAGCCCGGCCACGCTTTCCGCCTGGTCCTGGATCGCCTGCAGGAGGCGCGCCAGGTGGGGTTCATCGCCGCGTTCTACG
GCCTGCCGCTAACGCAGACCTCCCGCCTGTTTGATATCCCGGTCAGCGTGACCCGCTCGGGGATACTGTTCCCGGACTGG
CAAGCTGCCCCCTCCCCCCTGGCGCTGGACCTGAAGCTAGGGAACAGCGGGATCGGCGAGGCGGAGAGCCATCCGCTGGA
GCGCATTCCCGCGGCCCCCGATCCGGCCAGCGCGCCGACGGCGGCTACGCCGATCCGGCTGAGCGATAGCGGCGAACCCT
AG
ATGATGAAGAATAAGGCGATCTGGAGTGCCATCGGCTGCCTGCTGCTCAGCCTGAGCGGCTGCACCTCCGACGCGGCAAA
GCAGCAGGCCCGCAGCAGCGTATCCTGGCGGTACGGCAGCCAGGCCATCTTGGTGAATGCACAAACCGCCCCGGATCTGA
ACAGCTACGACGGCGAGTCGCACAGCCTGGTGCTGGCGGTGGTGCAGACTCGCTCGCCGGACGCCTTCTATCAGTTAATC
CAAACCCCCGAACTCGCCGGCCTCGTCTTGCAGGGCGGGCGTCCCCCTGACGGAATTTTGCAGGTAAGCCGCTATGCCCT
GGAGCCCGGCCACGCTTTCCGCCTGGTCCTGGATCGCCTGCAGGAGGCGCGCCAGGTGGGGTTCATCGCCGCGTTCTACG
GCCTGCCGCTAACGCAGACCTCCCGCCTGTTTGATATCCCGGTCAGCGTGACCCGCTCGGGGATACTGTTCCCGGACTGG
CAAGCTGCCCCCTCCCCCCTGGCGCTGGACCTGAAGCTAGGGAACAGCGGGATCGGCGAGGCGGAGAGCCATCCGCTGGA
GCGCATTCCCGCGGCCCCCGATCCGGCCAGCGCGCCGACGGCGGCTACGCCGATCCGGCTGAGCGATAGCGGCGAACCCT
AG