Detailed information of component protein


Summary

Component ID T6CP009327
Component protein type TssA
T6SS ID (Type) T6SS00396 experimental (Type i2)
Strain Enterobacter cloacae subsp. cloacae ATCC 13047
Replicon chromosome
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ECL_RS08975
Coordinate (Strand) 1844710..1846026 (+)
NCBI ID WP_013096445.1
RefSeq NC_014121
Uniprot ID A0A0M7BSK8_ENTCL, A0A0H3CJN4_ENTCC
KEGG ID enc:ECL_01821
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 1.5e-47 289..432
ImpA_N PF06812.14 6e-20 10..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-438 MTTQSERHLKTGGDPRTLADYAALRDEMNKLTHPARPDINWPQAEKLCLSLFEHNGVELQTAAWYTLVRTHLAGLYGMNEGLAIVDALLSRQWGNIWPQPVHTRMEILSALSRRLQQTMRTMTLTCTDLSQLYQTEEHLNALGDILQRLELRHASQLDALRTQVHNAAVRLENSEGGQEAGGAVLPASFTTPAEHVRWVYVAQPEPLPDRQVMTAPPPVKPWKPFAAGMATMLVIASSVAWGWQTMHTPDPAQTQLDATLAPLPDELSKAQLQALRQVSLSPVAGLSKTQNRLAQLRELKPDWAWRYGDSLVQQALILWPQEAKPLAQQWQQQVNVAALPQPYLTGWHQGMTQLQQLANRLNALDEQRGKYMTVSELKSAVFTMMQAFNSAVPAEEQLRQLADLPENQPWPVAQQSQTEQHLQQLIARYALMKQKTAE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9898 - -


  Protein sequence: 439 a.a.    

>T6CP009327 NC_014121:1844710-1846026 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssA]
MTTQSERHLKTGGDPRTLADYAALRDEMNKLTHPARPDINWPQAEKLCLSLFEHNGVELQTAAWYTLVRTHLAGLYGMNE
GLAIVDALLSRQWGNIWPQPVHTRMEILSALSRRLQQTMRTMTLTCTDLSQLYQTEEHLNALGDILQRLELRHASQLDAL
RTQVHNAAVRLENSEGGQEAGGAVLPASFTTPAEHVRWVYVAQPEPLPDRQVMTAPPPVKPWKPFAAGMATMLVIASSVA
WGWQTMHTPDPAQTQLDATLAPLPDELSKAQLQALRQVSLSPVAGLSKTQNRLAQLRELKPDWAWRYGDSLVQQALILWP
QEAKPLAQQWQQQVNVAALPQPYLTGWHQGMTQLQQLANRLNALDEQRGKYMTVSELKSAVFTMMQAFNSAVPAEEQLRQ
LADLPENQPWPVAQQSQTEQHLQQLIARYALMKQKTAE*

  Nucleotide sequence: 1317 bp    

>T6CP009327 NC_014121:1844710-1846026 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssA]
ATGACGACACAATCCGAACGCCACCTCAAAACCGGCGGCGACCCGCGTACGCTTGCGGATTACGCCGCCCTGCGTGACGA
AATGAACAAACTGACCCACCCGGCGCGACCGGACATCAACTGGCCGCAGGCGGAAAAGCTCTGTCTGTCGCTGTTTGAGC
ACAACGGGGTGGAACTGCAGACCGCGGCCTGGTATACGCTCGTCCGAACGCATCTGGCCGGTCTATACGGCATGAACGAA
GGACTGGCAATAGTGGACGCACTCCTCTCCCGCCAGTGGGGCAATATCTGGCCGCAGCCTGTGCATACGCGTATGGAAAT
TCTCAGCGCGCTCAGCAGGCGGTTACAACAGACGATGCGCACCATGACGCTGACCTGTACCGACCTCAGCCAGTTGTACC
AGACAGAAGAGCACCTGAACGCACTGGGCGACATATTGCAGCGTCTTGAACTGAGGCATGCCAGCCAGCTCGATGCCCTG
CGTACCCAGGTCCATAACGCGGCGGTACGGCTGGAAAACAGCGAGGGCGGGCAGGAGGCGGGCGGTGCTGTTCTCCCGGC
CAGCTTTACGACCCCGGCAGAACACGTCAGGTGGGTCTATGTCGCGCAGCCGGAGCCGCTGCCGGACAGGCAGGTGATGA
CCGCGCCGCCTCCGGTGAAGCCCTGGAAGCCATTTGCCGCCGGAATGGCGACCATGCTGGTGATTGCCAGCTCGGTGGCA
TGGGGATGGCAGACGATGCATACACCAGACCCGGCTCAAACACAGCTCGATGCCACTCTGGCGCCTTTACCTGACGAATT
ATCCAAAGCGCAGTTGCAGGCGCTGCGACAAGTGTCACTATCACCCGTGGCAGGGCTTAGCAAGACGCAAAATCGGCTCG
CACAGCTTAGGGAACTGAAACCTGACTGGGCATGGCGCTACGGCGATAGCCTGGTGCAGCAGGCGCTGATCCTTTGGCCG
CAAGAGGCGAAACCGCTGGCGCAACAGTGGCAGCAGCAGGTTAACGTTGCTGCACTTCCGCAGCCATATCTGACTGGCTG
GCATCAGGGAATGACCCAATTGCAACAACTGGCGAACCGGCTTAACGCACTTGATGAACAGCGGGGTAAGTACATGACGG
TCAGCGAGCTGAAATCAGCGGTATTTACCATGATGCAGGCATTTAACAGTGCCGTGCCTGCAGAGGAACAACTGCGACAG
CTGGCAGATCTTCCTGAAAACCAGCCGTGGCCTGTCGCGCAGCAGAGCCAGACAGAACAGCATCTGCAGCAGTTGATTGC
TCGTTATGCCCTGATGAAACAAAAAACGGCGGAATAG