Detailed information of component protein


Summary

Component ID T6CP009312
Component protein type TssL
T6SS ID (Type) T6SS00344 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (230 a.a.); Nucleotide sequence (690 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) KP1_RS11235
Coordinate (Strand) 2302288..2302977 (+)
NCBI ID WP_004176431.1
RefSeq NC_012731
Uniprot ID A0A7U7IGM2_KLEPN, V0B0K3_KLEPN, A0A7H4SFI2_KLEVA, A0A652Q1E0_9ENTR, A6T836_KLEP7, A0A3S4MD95_KLEAE, W9BP37_KLEPN, A0A377ZU02_KLEPN
KEGG ID kpnk:BN49_2465, kpk:A593_21460, kpn:KPN_01325, kpv:KPNIH29_11390, kpy:KPNIH31_11040, kpt:VK055_1103
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 3.3e-30 14..215

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-229 VNEPKRGNAASIDIDALLQNTWLQVISLRHGPQFRDEEGYTLWQRCIADVERVQHELKASGLDDASCQHILTAQCALLDEAVKGRGVEDEACLQWYDIPLQGHFLGTMDAGDTLCERMRDVLREPAPNLAVVTCFQRVMLLGFIGSFRSLHDPERLKLVNALGERVPPFQCPATAPVLVESRAGLGISGWLAPWPVRIGLSVVVVLALWWGLNHWLDHLLLTLLPGEVK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9974 - -



  Protein sequence: 230 a.a.    

>T6CP009312 NC_012731:2302288-2302977 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssL]
VNEPKRGNAASIDIDALLQNTWLQVISLRHGPQFRDEEGYTLWQRCIADVERVQHELKASGLDDASCQHILTAQCALLDE
AVKGRGVEDEACLQWYDIPLQGHFLGTMDAGDTLCERMRDVLREPAPNLAVVTCFQRVMLLGFIGSFRSLHDPERLKLVN
ALGERVPPFQCPATAPVLVESRAGLGISGWLAPWPVRIGLSVVVVLALWWGLNHWLDHLLLTLLPGEVK*

  Nucleotide sequence: 690 bp    

>T6CP009312 NC_012731:2302288-2302977 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssL]
GTGAATGAGCCTAAACGCGGCAACGCCGCGTCCATTGATATTGATGCGCTGCTGCAGAACACCTGGCTGCAGGTTATCAG
CCTGCGCCACGGCCCGCAGTTCCGCGATGAGGAAGGGTACACGCTATGGCAGCGCTGTATTGCTGATGTCGAGCGCGTGC
AACATGAGCTGAAGGCGAGCGGGCTTGATGACGCCAGCTGTCAGCATATTCTCACCGCCCAGTGCGCGCTGCTCGATGAA
GCAGTGAAAGGTCGCGGCGTGGAGGATGAGGCCTGCCTGCAGTGGTATGACATTCCGCTGCAGGGGCACTTCCTCGGCAC
CATGGACGCCGGCGACACCCTGTGCGAGCGGATGCGTGATGTGTTGCGTGAACCGGCGCCCAACCTGGCCGTGGTCACCT
GTTTTCAGCGGGTGATGCTGCTGGGTTTTATTGGCAGCTTTCGCTCCCTCCACGACCCCGAGCGCCTGAAGCTGGTCAAC
GCGCTCGGTGAGCGTGTTCCTCCTTTTCAGTGCCCGGCTACCGCTCCCGTACTGGTAGAGAGTCGCGCCGGTCTGGGGAT
AAGCGGCTGGCTGGCCCCATGGCCGGTACGTATTGGCCTGAGCGTGGTGGTGGTACTCGCCCTGTGGTGGGGGCTCAACC
ACTGGCTCGATCACCTGCTGCTGACCTTGTTACCGGGGGAGGTGAAATGA