Detailed information of component protein
Summary
| Component ID | T6CP009307 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00237  (Type i2) |
| Strain | Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980 |
| Replicon | chromosome |
| Sequence | Protein sequence (230 a.a.); Nucleotide sequence (690 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SARI_RS12280 |
| Coordinate (Strand) | 2554750..2555439 (-) |
| NCBI ID | WP_001248376.1 |
| RefSeq | NC_010067 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 8e-42 | 7..215 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 230 a.a.
>T6CP009307 NC_010067:c2555439-2554750 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssL]
MRQDIDIDQLMAETWLTVTMLKKGAVTLDGTALYDKCVKQVETVREALERAGYDDASVEHISYAQCALLDETVMSRKSEK
SEEGEEPKVDEGQVAWRKAPLQARFFGSLRAGEALWDRIAEVLRQPSPNPAVLTCYHRVIALGFQGLYSLKAVSQSQRDE
VVKALSERVSPPDTGLSLVVHRMGKHRWSLMRSVWFWIVLAVILTGVIWWGGHLWLQALLSAHIPELHG*
MRQDIDIDQLMAETWLTVTMLKKGAVTLDGTALYDKCVKQVETVREALERAGYDDASVEHISYAQCALLDETVMSRKSEK
SEEGEEPKVDEGQVAWRKAPLQARFFGSLRAGEALWDRIAEVLRQPSPNPAVLTCYHRVIALGFQGLYSLKAVSQSQRDE
VVKALSERVSPPDTGLSLVVHRMGKHRWSLMRSVWFWIVLAVILTGVIWWGGHLWLQALLSAHIPELHG*
Nucleotide sequence: 690 bp
>T6CP009307 NC_010067:c2555439-2554750 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssL]
ATGAGACAGGATATCGATATCGACCAGCTGATGGCGGAGACCTGGCTTACCGTCACTATGCTGAAGAAAGGTGCCGTCAC
GCTTGATGGCACTGCTCTTTACGACAAGTGCGTTAAACAGGTTGAAACTGTGCGGGAAGCGCTGGAGCGTGCCGGTTATG
ACGACGCCAGTGTGGAGCATATTTCCTACGCACAATGTGCCCTGCTGGACGAAACGGTGATGAGCCGTAAGTCTGAAAAA
AGCGAGGAAGGAGAGGAGCCGAAAGTTGATGAAGGCCAGGTGGCCTGGCGTAAAGCGCCGCTTCAGGCCCGTTTTTTTGG
CTCACTTCGGGCTGGTGAAGCACTGTGGGACAGGATTGCAGAGGTTCTGCGTCAGCCCTCACCGAACCCGGCCGTTCTGA
CGTGCTATCACCGGGTGATCGCCCTGGGCTTTCAGGGACTGTACAGCCTGAAAGCAGTCAGCCAGTCGCAGAGGGATGAG
GTGGTCAAAGCCCTCTCTGAGCGCGTATCTCCGCCAGATACAGGCCTGTCTCTGGTTGTTCACCGGATGGGGAAACATCG
CTGGAGTCTGATGCGCTCTGTCTGGTTCTGGATAGTGCTCGCCGTCATTCTTACCGGCGTTATCTGGTGGGGTGGCCACC
TCTGGCTCCAGGCACTCTTGTCAGCACATATACCGGAGTTGCATGGCTAA
ATGAGACAGGATATCGATATCGACCAGCTGATGGCGGAGACCTGGCTTACCGTCACTATGCTGAAGAAAGGTGCCGTCAC
GCTTGATGGCACTGCTCTTTACGACAAGTGCGTTAAACAGGTTGAAACTGTGCGGGAAGCGCTGGAGCGTGCCGGTTATG
ACGACGCCAGTGTGGAGCATATTTCCTACGCACAATGTGCCCTGCTGGACGAAACGGTGATGAGCCGTAAGTCTGAAAAA
AGCGAGGAAGGAGAGGAGCCGAAAGTTGATGAAGGCCAGGTGGCCTGGCGTAAAGCGCCGCTTCAGGCCCGTTTTTTTGG
CTCACTTCGGGCTGGTGAAGCACTGTGGGACAGGATTGCAGAGGTTCTGCGTCAGCCCTCACCGAACCCGGCCGTTCTGA
CGTGCTATCACCGGGTGATCGCCCTGGGCTTTCAGGGACTGTACAGCCTGAAAGCAGTCAGCCAGTCGCAGAGGGATGAG
GTGGTCAAAGCCCTCTCTGAGCGCGTATCTCCGCCAGATACAGGCCTGTCTCTGGTTGTTCACCGGATGGGGAAACATCG
CTGGAGTCTGATGCGCTCTGTCTGGTTCTGGATAGTGCTCGCCGTCATTCTTACCGGCGTTATCTGGTGGGGTGGCCACC
TCTGGCTCCAGGCACTCTTGTCAGCACATATACCGGAGTTGCATGGCTAA