Detailed information of component protein


Summary

Component ID T6CP009307
Component protein type TssL
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (230 a.a.); Nucleotide sequence (690 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) SARI_RS12280
Coordinate (Strand) 2554750..2555439 (-)
NCBI ID WP_001248376.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 8e-42 7..215

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 230 a.a.    

>T6CP009307 NC_010067:c2555439-2554750 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssL]
MRQDIDIDQLMAETWLTVTMLKKGAVTLDGTALYDKCVKQVETVREALERAGYDDASVEHISYAQCALLDETVMSRKSEK
SEEGEEPKVDEGQVAWRKAPLQARFFGSLRAGEALWDRIAEVLRQPSPNPAVLTCYHRVIALGFQGLYSLKAVSQSQRDE
VVKALSERVSPPDTGLSLVVHRMGKHRWSLMRSVWFWIVLAVILTGVIWWGGHLWLQALLSAHIPELHG*

  Nucleotide sequence: 690 bp    

>T6CP009307 NC_010067:c2555439-2554750 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssL]
ATGAGACAGGATATCGATATCGACCAGCTGATGGCGGAGACCTGGCTTACCGTCACTATGCTGAAGAAAGGTGCCGTCAC
GCTTGATGGCACTGCTCTTTACGACAAGTGCGTTAAACAGGTTGAAACTGTGCGGGAAGCGCTGGAGCGTGCCGGTTATG
ACGACGCCAGTGTGGAGCATATTTCCTACGCACAATGTGCCCTGCTGGACGAAACGGTGATGAGCCGTAAGTCTGAAAAA
AGCGAGGAAGGAGAGGAGCCGAAAGTTGATGAAGGCCAGGTGGCCTGGCGTAAAGCGCCGCTTCAGGCCCGTTTTTTTGG
CTCACTTCGGGCTGGTGAAGCACTGTGGGACAGGATTGCAGAGGTTCTGCGTCAGCCCTCACCGAACCCGGCCGTTCTGA
CGTGCTATCACCGGGTGATCGCCCTGGGCTTTCAGGGACTGTACAGCCTGAAAGCAGTCAGCCAGTCGCAGAGGGATGAG
GTGGTCAAAGCCCTCTCTGAGCGCGTATCTCCGCCAGATACAGGCCTGTCTCTGGTTGTTCACCGGATGGGGAAACATCG
CTGGAGTCTGATGCGCTCTGTCTGGTTCTGGATAGTGCTCGCCGTCATTCTTACCGGCGTTATCTGGTGGGGTGGCCACC
TCTGGCTCCAGGCACTCTTGTCAGCACATATACCGGAGTTGCATGGCTAA