Detailed information of component protein


Summary

Component ID T6CP009059
Component protein type TssA
T6SS ID (Type) T6SS00485 insolico (Type i1)
Strain Escherichia coli 042
Replicon chromosome
Sequence Protein sequence (481 a.a.); Nucleotide sequence (1443 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) EC042_RS01155
Coordinate (Strand) 248942..250384 (-)
NCBI ID WP_001306815.1
RefSeq NC_017626
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.3e-70 232..475
ImpA_N PF06812.14 2.7e-05 32..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-480 MAMDLRNPDVWLAHLLENLPEDKLSAALDDGNADWEFVDSEIVKLGSLAHSQLDIPELQRRGLMLLASETKDFRLLAHLLRTLQHAGDILLASRMLAQYTEHYWTCAAPQNMAHKKRFAAQVIKRFESAVQDFAGNAATIQRDALLGELAKLAQCWQAHNAPELAKATDDLFALFQRAFRDVAPEMPSSARTAAIAPQATAGSVPDMSPHTVAAQPPVAATPIPQVTVDSHDDKAWRDTLLKVAAILCERQPESPQGYRLRRHALWQTITSTPQAESDGRTPLAAFPVDMMDDYLARLNNADMALWQQVEKSLLLAPYWLDGHYLSAQTALRLGYKQVADAIRDEVTGFLARLPALINLLFNDRTPFVSEQTKQWLASSGSVNQTAPVVQTDEELQAARACFDENGLEAALRYLENLPEGDPRHQFHRQFFGAQLLEEAGMVQLAQQQYRILFRTGLHMMLSEWEPSLLEALEQKFTAEQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -


  Protein sequence: 481 a.a.    

>T6CP009059 NC_017626:c250384-248942 [Escherichia coli 042] [TssA]
MAMDLRNPDVWLAHLLENLPEDKLSAALDDGNADWEFVDSEIVKLGSLAHSQLDIPELQRRGLMLLASETKDFRLLAHLL
RTLQHAGDILLASRMLAQYTEHYWTCAAPQNMAHKKRFAAQVIKRFESAVQDFAGNAATIQRDALLGELAKLAQCWQAHN
APELAKATDDLFALFQRAFRDVAPEMPSSARTAAIAPQATAGSVPDMSPHTVAAQPPVAATPIPQVTVDSHDDKAWRDTL
LKVAAILCERQPESPQGYRLRRHALWQTITSTPQAESDGRTPLAAFPVDMMDDYLARLNNADMALWQQVEKSLLLAPYWL
DGHYLSAQTALRLGYKQVADAIRDEVTGFLARLPALINLLFNDRTPFVSEQTKQWLASSGSVNQTAPVVQTDEELQAARA
CFDENGLEAALRYLENLPEGDPRHQFHRQFFGAQLLEEAGMVQLAQQQYRILFRTGLHMMLSEWEPSLLEALEQKFTAEQ
*

  Nucleotide sequence: 1443 bp    

>T6CP009059 NC_017626:c250384-248942 [Escherichia coli 042] [TssA]
ATGGCAATGGACTTACGTAATCCCGATGTATGGCTTGCACACCTGCTGGAAAACCTGCCGGAAGATAAGCTGTCCGCCGC
GCTTGATGATGGCAATGCAGACTGGGAGTTTGTCGACAGCGAAATCGTCAAGCTCGGTTCACTGGCGCACAGCCAGCTTG
ATATCCCGGAACTTCAGCGCCGGGGCCTGATGCTTCTGGCCTCAGAAACCAAAGATTTTCGCCTGCTGGCCCACCTGCTG
CGTACCCTGCAACATGCCGGTGATATTCTGCTGGCCTCCAGGATGCTGGCACAATATACAGAACACTACTGGACATGCGC
CGCACCGCAGAACATGGCCCACAAAAAACGCTTTGCCGCCCAGGTGATAAAACGCTTTGAGTCTGCCGTTCAGGACTTTG
CCGGGAATGCTGCGACAATACAGCGCGATGCTTTGCTGGGAGAGCTGGCAAAACTGGCACAGTGCTGGCAGGCGCACAAC
GCTCCTGAGCTGGCTAAGGCGACAGACGATTTATTTGCCCTGTTTCAGCGCGCGTTTCGTGATGTAGCGCCTGAAATGCC
ATCATCTGCACGAACCGCCGCCATTGCGCCGCAGGCCACAGCCGGATCTGTACCGGATATGTCACCGCACACGGTTGCCG
CTCAGCCTCCTGTTGCAGCCACTCCAATCCCGCAGGTCACTGTTGACAGCCACGACGATAAAGCATGGCGCGACACCCTG
CTGAAGGTGGCCGCCATTCTCTGTGAGCGCCAGCCGGAGTCACCGCAGGGTTACCGACTGCGCCGCCATGCTCTGTGGCA
GACCATCACCAGTACCCCGCAGGCAGAAAGCGATGGCCGGACCCCACTGGCAGCCTTCCCTGTCGATATGATGGATGATT
ACCTGGCGCGGCTGAACAATGCCGACATGGCGCTGTGGCAGCAGGTGGAAAAAAGCCTGCTGCTGGCCCCGTACTGGCTG
GACGGTCATTACCTCTCAGCACAGACCGCGCTGCGCCTCGGTTATAAACAGGTGGCGGATGCTATCCGTGATGAAGTTAC
CGGTTTTCTGGCCCGCCTGCCCGCACTGATCAACCTGTTGTTTAACGACCGCACTCCGTTTGTGTCCGAACAGACGAAAC
AGTGGCTGGCATCATCCGGCTCAGTCAACCAGACCGCCCCGGTTGTACAGACCGATGAAGAATTACAGGCGGCCAGGGCG
TGCTTCGATGAAAACGGGCTGGAAGCCGCGCTGCGGTACCTGGAAAACCTGCCCGAAGGTGATCCCCGCCACCAGTTTCA
CCGCCAGTTTTTCGGCGCGCAGTTACTGGAAGAGGCCGGTATGGTTCAGCTTGCACAACAGCAGTACCGGATACTCTTCA
GAACAGGATTACACATGATGCTGTCCGAATGGGAACCGTCCCTGCTGGAAGCACTGGAACAAAAATTCACGGCAGAACAG
TAA